View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3547_low_36 (Length: 344)

Name: NF3547_low_36
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3547_low_36
NF3547_low_36
[»] chr4 (5 HSPs)
chr4 (123-335)||(34722424-34722637)
chr4 (160-335)||(19613759-19613935)
chr4 (21-124)||(19613606-19613709)
chr4 (21-100)||(34722309-34722388)
chr4 (21-119)||(44722578-44722677)
[»] chr5 (2 HSPs)
chr5 (123-335)||(30671153-30671365)
chr5 (21-122)||(30671028-30671129)
[»] chr1 (7 HSPs)
chr1 (123-335)||(22060471-22060683)
chr1 (223-335)||(25344378-25344492)
chr1 (21-124)||(22060346-22060449)
chr1 (23-105)||(25343835-25343917)
chr1 (23-91)||(25344003-25344071)
chr1 (23-91)||(25344167-25344235)
chr1 (23-100)||(25343661-25343738)
[»] chr8 (4 HSPs)
chr8 (155-335)||(11662600-11662781)
chr8 (223-335)||(24946519-24946633)
chr8 (21-124)||(11662826-11662923)
chr8 (24-100)||(24946309-24946390)
[»] chr6 (2 HSPs)
chr6 (21-122)||(12867512-12867613)
chr6 (21-100)||(9752814-9752894)
[»] chr3 (4 HSPs)
chr3 (243-333)||(18347635-18347725)
chr3 (21-105)||(18347396-18347481)
chr3 (24-63)||(19306023-19306062)
chr3 (81-122)||(5124401-5124442)
[»] chr7 (2 HSPs)
chr7 (21-95)||(7137209-7137284)
chr7 (62-119)||(43304352-43304409)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 123 - 335
Target Start/End: Original strand, 34722424 - 34722637
Alignment:
Q  123 ttaggccggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaagtaccaagtaccaagag-gtgttta 221  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34722424 ttaggctggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaagtaccaagtaccaagagcgtgttta 34722523  T
Q  222 attctttcatactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcattcactaatctaccaacactccaaacactaatctcctctc 321  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34722524 attctttcttactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcagtcactaatctaccaacactccaaacactaatctcctctc 34722623  T
Q  322 ttctctccctttgc 335  Q
    ||||||||||||||    
T  34722624 ttctctccctttgc 34722637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 160 - 335
Target Start/End: Original strand, 19613759 - 19613935
Alignment:
Q  160 tctcatcagttaccaaagcaaactagccaactatcaaagtaccaagtaccaagag-gtgtttaattctttcatactccccaatgatgacttttgctatta 258  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||    
T  19613759 tctcatcagttaccaaagcaaactagccatctatcaaagtaccaagtaccaagagcgtgtttaattctttcttactccccaatgatggcttttgctatta 19613858  T
Q  259 aattgaaggaatcaaatggttcattcactaatctaccaacactccaaacactaatctcctctcttctctccctttgc 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19613859 aattgaaggaatcaaatggttcattcactaatctaccaacactccaaacactaatcccctctcttctctccctttgc 19613935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 19613606 - 19613709
Alignment:
Q  21 ggatgtgtttgggccataaaaattaaaaccgaccggttcgattcggttttcggtttataacttaagaaccggaccaaaccaaaccgaaccgcacttatta 120  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19613606 ggatgtgtttgggccataaaaattaaaaccgaccggttcggttcgatttttggtttataacttaagaaccggaccgaaccaaaccgaaccgcacttatta 19613705  T
Q  121 tatt 124  Q
    ||||    
T  19613706 tatt 19613709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 34722309 - 34722388
Alignment:
Q  21 ggatgtgtttgggccataaaaattaaaaccgaccggttcgattcggttttcggtttataacttaagaaccggaccaaacc 100  Q
    |||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| ||||    
T  34722309 ggatgtgtttggaccataaaaattataaccgaccggttcggttcggttttcggtttataacttaagaaccgaaccgaacc 34722388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 44722677 - 44722578
Alignment:
Q  21 ggatgtgtttgggccataaaaattaa-aaccgaccggttcgattcggttttcggtttataacttaagaaccggaccaaaccaaaccgaaccgcacttatt 119  Q
    |||||||||||||||||   || ||| |||||||| ||||| |||||||||||||| | ||||||| ||||||||| | || ||||||||||||||||||    
T  44722677 ggatgtgtttgggccatctgaagtaagaaccgaccagttcggttcggttttcggttcacaacttaaaaaccggaccgagccgaaccgaaccgcacttatt 44722578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 123 - 335
Target Start/End: Original strand, 30671153 - 30671365
Alignment:
Q  123 ttaggccggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaagtaccaagtaccaagag-gtgttta 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30671153 ttaggccggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaagtaccaagtaccaagagcgtgttta 30671252  T
Q  222 attctttcatactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcattcactaatctaccaacactccaaacactaatctcctctc 321  Q
    |||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30671253 attctttcttactccc-aatgatgacttttgctattaaactgaaggaatcaaatggttcattcactaatctaccaacactccaaacactaatctcctctc 30671351  T
Q  322 ttctctccctttgc 335  Q
    ||||||||||||||    
T  30671352 ttctctccctttgc 30671365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 30671028 - 30671129
Alignment:
Q  21 ggatgtgtttgggccataaaaattaaaaccgaccggttcgattcggttttcggtttataacttaagaaccggaccaaaccaaaccgaaccgcacttatta 120  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  30671028 ggatgtgtttgggccataaaaattaaaaccgaccggttcggttcggttttcggtttataacttaagaaccggaccgaaccaaaccgaaccacacttatta 30671127  T
Q  121 ta 122  Q
    ||    
T  30671128 ta 30671129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 123 - 335
Target Start/End: Original strand, 22060471 - 22060683
Alignment:
Q  123 ttaggccggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaagtaccaagtaccaagag-gtgttta 221  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22060471 ttaggctggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaagtaccaagtaccaagagcgtgttta 22060570  T
Q  222 attctttcatactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcattcactaatctaccaacactccaaacactaatctcctctc 321  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22060571 attctttcttac-ccccaatgatgacttttgctattaaattgaaggaatcaaatggttcattcactaatctaccaacactccaaacactaatcccctctc 22060669  T
Q  322 ttctctccctttgc 335  Q
    ||||||||||||||    
T  22060670 ttctctccctttgc 22060683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 223 - 335
Target Start/End: Original strand, 25344378 - 25344492
Alignment:
Q  223 ttctttcatactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcatt---cactaatctaccaacactccaaacactaatctcctc 319  Q
    ||||||| ||||||| | |||||||||||||||||||||||||||||||| ||| ||||||   ||||||||||||||||||||||||||||||| ||||    
T  25344378 ttctttcttactccc-actgatgacttttgctattaaattgaaggaatcagatgattcattattcactaatctaccaacactccaaacactaatcacctc 25344476  T
Q  320 tcttctctccctttgc 335  Q
    ||||||||||||||||    
T  25344477 tcttctctccctttgc 25344492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 22060346 - 22060449
Alignment:
Q  21 ggatgtgtttgggccataaaaattaaaaccgacc-----ggttcgattcggttttcggtttataacttaagaaccggaccaaaccaaaccgaaccgcact 115  Q
    |||||||||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||||     |||||||| ||| ||||||||||    
T  22060346 ggatgtgtttgggccataaaaattaaaatcgaccagttcggttcgattcggttttcggtttataacttaaga-----accaaaccgaactgaaccgcact 22060440  T
Q  116 tattatatt 124  Q
    |||||||||    
T  22060441 tattatatt 22060449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 25343835 - 25343917
Alignment:
Q  23 atgtgtttgggccataaaaattaaaaccgaccggttcgattcggttttcggtttataacttaagaaccggaccaaaccaaacc 105  Q
    |||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| ||| |||| ||||    
T  25343835 atgtgtttaggccataaaaattaaaaccgactggttcggttcggttttcggtttataacttaaaaaccgaaccgaaccgaacc 25343917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 25344003 - 25344071
Alignment:
Q  23 atgtgtttgggccataaaaattaaaaccgaccggttcgattcggttttcggtttataacttaagaaccg 91  Q
    |||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||    
T  25344003 atgtgtttaggccataaaaattaaaaccgactggttcggttcggttttcggtttataacttaaaaaccg 25344071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 25344167 - 25344235
Alignment:
Q  23 atgtgtttgggccataaaaattaaaaccgaccggttcgattcggttttcggtttataacttaagaaccg 91  Q
    |||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||    
T  25344167 atgtgtttaggccataaaaattaaaaccgactggttcggttcggttttcggtttataacttaaaaaccg 25344235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 25343661 - 25343738
Alignment:
Q  23 atgtgtttgggccataaaaattaaaaccgaccggttcgattcggttttcggtttataacttaagaaccggaccaaacc 100  Q
    |||||||| |||||||||||||||||||||| |||||| ||||||||||| |||||||||||| ||||| ||| ||||    
T  25343661 atgtgtttaggccataaaaattaaaaccgactggttcggttcggttttcgatttataacttaaaaaccgaaccgaacc 25343738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 155 - 335
Target Start/End: Complemental strand, 11662781 - 11662600
Alignment:
Q  155 atcgctctcatcagttaccaaagcaaactagccaactatcaaagtaccaagtaccaagag-gtgtttaattctttcatactccccaatgatgacttttgc 253  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  11662781 atcgctctcatcagttaccaaagcaaactagccatctatcaaagtaccaagtaccaagagcgtgtttaattctttcttactccccaatgatgacttttgc 11662682  T
Q  254 tattaaattgaaggaatcaaatggttcattcactaatctaccaacactccaaacactaatctcctctcttctctccctttgc 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11662681 tattaaattgaaggaatcaaatggttcattcactaatctaccaacactccaaacactaatcccctctcttctctccctttgc 11662600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 223 - 335
Target Start/End: Original strand, 24946519 - 24946633
Alignment:
Q  223 ttctttcatactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcatt---cactaatctaccaacactccaaacactaatctcctc 319  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||| | ||| ||||||   ||||||||||||||||||||||||||||||| ||||    
T  24946519 ttctttcttactccc-aatgatgacttttgctattaaattgaaggaataagatgattcattattcactaatctaccaacactccaaacactaatcacctc 24946617  T
Q  320 tcttctctccctttgc 335  Q
    ||||||||||||||||    
T  24946618 tcttctctccctttgc 24946633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 11662923 - 11662826
Alignment:
Q  21 ggatgtgtttgggccataaaaattaaaaccgaccggttcgattcggttttcggtttataacttaagaaccggaccaaaccaaaccgaaccgcacttatta 120  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||      | || ||||||||||||||||||||||||    
T  11662923 ggatgtgtttgggccataaaaattaaaatcgaccggttcggttcggtttttggtttataacttaa------ggccgaaccaaaccgaaccgcacttatta 11662830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 24946309 - 24946390
Alignment:
Q  24 tgtgtttgggccataaaaattaaaaccgaccggttcgattcggtt-----ttcggtttataacttaagaaccggaccaaacc 100  Q
    |||||||||||||||||||||||||||||| |||||| || ||||     || |||||||||||||| ||||| ||||||||    
T  24946309 tgtgtttgggccataaaaattaaaaccgactggttcggtttggttcgatttttggtttataacttaaaaaccgaaccaaacc 24946390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 12867613 - 12867512
Alignment:
Q  21 ggatgtgtttgggccataaaaattaaaaccgaccggttcgattcggttttcggtttataacttaagaaccggaccaaaccaaaccgaaccgcacttatta 120  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||| || ||||||||| |||||||||  ||| |||||||||||||||| ||    
T  12867613 ggatgtgtttggaccataaaaattaaaaccgaccggttcggttcggttttcgattaataacttaaaaaccggaccggaccgaaccgaaccgcacttacta 12867514  T
Q  121 ta 122  Q
    ||    
T  12867513 ta 12867512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 9752814 - 9752894
Alignment:
Q  21 ggatgtgtttgggccataaa-aattaaaaccgaccggttcgattcggttttcggtttataacttaagaaccggaccaaacc 100  Q
    ||||||||||||| |||| | ||| ||||| |||| ||||| ||||||||| ||||| | |||||  ||||||||||||||    
T  9752814 ggatgtgtttgggtcatatataataaaaactgaccagttcggttcggtttttggttttttacttacaaaccggaccaaacc 9752894  T

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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 243 - 333
Target Start/End: Original strand, 18347635 - 18347725
Alignment:
Q  243 atgacttttgctattaaattgaaggaatcaaatggttcattcactaatctaccaacactccaaacactaatctcctctcttctctcccttt 333  Q
    ||||||||||||| |||||||||||||||| || |||||||   |||||||||| ||||||||||||||||| ||||||||||||||||||    
T  18347635 atgacttttgctactaaattgaaggaatcagatagttcatttcttaatctaccagcactccaaacactaatcacctctcttctctcccttt 18347725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 18347396 - 18347481
Alignment:
Q  21 ggatgtgtttgggccataaaaattaaaa-ccgaccggttcgattcggttttcggtttataacttaagaaccggaccaaaccaaacc 105  Q
    |||||||||||||||||| | ||||||| ||||||| || |||| | |||| |||||||||||||||||||||||| |||| ||||    
T  18347396 ggatgtgtttgggccatatagattaaaaaccgaccgatttgatttgatttttggtttataacttaagaaccggaccgaaccgaacc 18347481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 19306023 - 19306062
Alignment:
Q  24 tgtgtttgggccataaaaattaaaaccgaccggttcgatt 63  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19306023 tgtgtttgggccataaaaattaaaaccgaccggttcgatt 19306062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 5124401 - 5124442
Alignment:
Q  81 cttaagaaccggaccaaaccaaaccgaaccgcacttattata 122  Q
    ||||||||| ||||  ||||||||||||||||||||||||||    
T  5124401 cttaagaactggactgaaccaaaccgaaccgcacttattata 5124442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 7137209 - 7137284
Alignment:
Q  21 ggatgtgtttgggccataaaaattaaaa-ccgaccggttcgattcggttttcggtttataacttaagaaccggacc 95  Q
    |||||||||||||||||| | ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  7137209 ggatgtgtttgggccatatagattaaaaaccgactggttcggttcggttttcggtttataacttaagaaccggacc 7137284  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 43304352 - 43304409
Alignment:
Q  62 ttcggttttcggtttataacttaagaaccggaccaaaccaaaccgaaccgcacttatt 119  Q
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T  43304352 ttcggttttcggttcacaacttaaaaaccggaccgagccgaaccgagccgcacttatt 43304409  T

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