View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_39 (Length: 332)
Name: NF3547_low_39
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 44523995 - 44524199
Alignment:
| Q |
20 |
tataaagagatatacattaagtgtcttcatagctattatttgcttttgataagccaacggtaataaacatcatataaggaaatatacttatggtttgact |
119 |
Q |
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| T |
44523995 |
tataaagagatatacattaagtgtcttcatggctattatttgcttttgataagccaacagtaataaacatcatataaggaaatatacttatggtttgact |
44524094 |
T |
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| Q |
120 |
ccatgtattaatgcattgcattcacacatattcctttccaatagtttgtttgatttctcttgatttgat---tcattaagagaggaatcttcattattct |
216 |
Q |
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| T |
44524095 |
ccatgtattaaggcattacattcacacatattcctttccaatggtttgtttgatttctcttgatttgattcatcattaagagaggaatcttcattattct |
44524194 |
T |
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| Q |
217 |
ttaca |
221 |
Q |
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||||| |
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| T |
44524195 |
ttaca |
44524199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 37 - 221
Target Start/End: Complemental strand, 41319115 - 41318931
Alignment:
| Q |
37 |
taagtgtcttcatagctattatttgcttttgataagccaacggtaataaacatcatataaggaaatatacttatggtttgactccatgtattaatgcatt |
136 |
Q |
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| T |
41319115 |
taagtgtcttcatggctattatttgcttttgataagtcaacggtaataaacatcatataagtaaatatacttatggtttgactccatgtattaaggcatt |
41319016 |
T |
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| Q |
137 |
gcattcacacatattcctttccaatagtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca |
221 |
Q |
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| T |
41319015 |
gcattcacacatattcctttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca |
41318931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 12503336 - 12503538
Alignment:
| Q |
20 |
tataaagagatatacattaagtgtcttcatagctattatttgcttttgataagccaacggtaataaacatcatataaggaaatatactta---------- |
109 |
Q |
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||||| || |||||||||||||| ||| || |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12503336 |
tataaggaaatatacattaagtggctttatggctattatttccttttgataagccaacggtaataaaccatatataaggaaatatacttaagtgcctcta |
12503435 |
T |
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| Q |
110 |
--tggtttgactccatgtattaatgcattgcattcacacatattcctttccaatagtttgtttgatttctcttgatttgattcattaagagaggaatctt |
207 |
Q |
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| T |
12503436 |
tttggtttgactccatgtatcaaggcattgcattcacac--attgatttccaa---------tggtttatcttgatttgattcattaa-agaggaatctt |
12503523 |
T |
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| Q |
208 |
cattattctttacac |
222 |
Q |
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| T |
12503524 |
cgttattctttacac |
12503538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 11831185 - 11831253
Alignment:
| Q |
153 |
ctttccaatagtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca |
221 |
Q |
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| T |
11831185 |
ctttccaatagtttgtttgatttgtcttgatttgattcattaatagttgagtcttcattattctttaca |
11831253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 37130580 - 37130522
Alignment:
| Q |
163 |
gtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca |
221 |
Q |
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|||| |||||||| ||||||||||||||||||| || || | |||||||||||||||| |
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| T |
37130580 |
gtttttttgatttgtcttgatttgattcattaatagttgagttttcattattctttaca |
37130522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 11831182 - 11831133
Alignment:
| Q |
172 |
atttctcttgatttgattcattaagagaggaatcttcattattctttaca |
221 |
Q |
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|||| ||||||||||||||||||| || || |||||||||||||||||| |
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| T |
11831182 |
atttgtcttgatttgattcattaatagttgagtcttcattattctttaca |
11831133 |
T |
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