View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_40 (Length: 329)
Name: NF3547_low_40
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_40 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 329
Target Start/End: Complemental strand, 44220475 - 44220159
Alignment:
| Q |
14 |
catttagaacaatcaccatgaaggaactttgttaccctcatcctaaaaacgaaatatgaattgcaacctaatgggagattttactccatatgttgataaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44220475 |
catttagaacaatcaccatgaaggaactttgttaccctcatcctaaaatcgaaatatgaattgcaacctaatgggagattttgttccatatgttgataaa |
44220376 |
T |
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| Q |
114 |
cctactgcaaaatgtacagattttcatattgaacttcagatagaagcaacccaacagttgatatagttatctttgataaagagggttggggagacaatga |
213 |
Q |
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| T |
44220375 |
actactgcaaaatgtacagattttcatattgaacttcagatagaagcaacccaacagttgatatagttatctttgataaagagggttggggagacaatga |
44220276 |
T |
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| Q |
214 |
cagtacaaatcaaaatgcttttaaactatctcaacaaaaaagcattacaaagtacatttagcattcaaactaa-cactcggatgagacgagcaagcatat |
312 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
44220275 |
cagtacaaatcgaaatgcttttaaactatctcaacaaaaaagcattacaaagtacatttagcattcaaactaaccactcggatgagacgagcgagcatat |
44220176 |
T |
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| Q |
313 |
tggtagattaactgaac |
329 |
Q |
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||||||||||||||||| |
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| T |
44220175 |
tggtagattaactgaac |
44220159 |
T |
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