View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_41 (Length: 325)
Name: NF3547_low_41
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_41 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 21 - 325
Target Start/End: Original strand, 38481869 - 38482174
Alignment:
| Q |
21 |
agttgtcacttgattgctcatatcaacaatttcattccttcctcataccgtcgataactcatccacaatacaatcaatccttcaagtgaattggaggaaa |
120 |
Q |
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| T |
38481869 |
agttgtcacttgattgctcatatcaacaattccattccttcctcataccatcgataactcatccacaatacaatcaatccttcaagtgaattggaagaaa |
38481968 |
T |
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| Q |
121 |
acaagtcacgtgcaacaaactccaactataatcctttccaattcccacacttttgcatggcttcaaagagtacaaaaa----cccttcaactatgaaaaa |
216 |
Q |
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| T |
38481969 |
acaagtcacgc---acaaactccaactataatcctttccaattcccacacttttgcatggcttcaaagagtacaaaaagatgcccttcaactatgaaaaa |
38482065 |
T |
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| Q |
217 |
tacacctaagacagactcaaagaaagagaatctgtttgaaactcatgaactgatatgtttttaggtggcaagtcttccattctgcttgatgttaagctat |
316 |
Q |
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| T |
38482066 |
tacacctaagacagactcaaagaaagagaatctgtttgaaactcatgaactgatatttttttaggtggcaagtcttccattctgcttgatgttaagccat |
38482165 |
T |
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| Q |
317 |
gggatgatg |
325 |
Q |
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| T |
38482166 |
gggatgatg |
38482174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 248 - 325
Target Start/End: Original strand, 38468797 - 38468874
Alignment:
| Q |
248 |
ctgtttgaaactcatgaactgatatgtttttaggtggcaagtcttccattctgcttgatgttaagctatgggatgatg |
325 |
Q |
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| T |
38468797 |
ctgtttgaaactcattgagtgatatttttccaggtggcaagtcttccattctgcttgatgttaagccatgggatgatg |
38468874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 51274554 - 51274467
Alignment:
| Q |
113 |
ggaggaaaacaagtcacgtgcaacaaactccaactataatcct-ttccaattcccacacttttgcatggcttcaaagagtacaaaaac |
199 |
Q |
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| T |
51274554 |
ggaggaaaacaagtcacgtgcaacaaactccaactataatcctgttccaattcccacaccttcacaaagcatcgaagagtacaaaaac |
51274467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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