View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_42 (Length: 322)
Name: NF3547_low_42
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 33720875 - 33720582
Alignment:
| Q |
13 |
tgagccaggaccaggtttaagcaaaccataattctcagctctcaaacctgaacatgctttgttccttccaccctgagaacaccaccctccaaaagaaaat |
112 |
Q |
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| T |
33720875 |
tgagccaggaccaggtttaagcaaaccataattctcagctctcaaacctgaacatgctttgttccttccaccctgagaacaccaccctccaaaagaaaat |
33720776 |
T |
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| Q |
113 |
ccccccttatacctcttcagaagatctctatcaattttatcaagaacaatattatttctcttgaattttctagcgaaaggacggctactcagaaccattt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33720775 |
ccccccttatacctcttcagaagatctctatcaattttatcaagaacaatattatttctcttgaattttctagcgaaaggacggctactcagaaccattt |
33720676 |
T |
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| Q |
213 |
tcctataatctttaagtcctagagacctagggtgttgttttggaggattgtcccaagtaatgtagtgaagatcatggttggcagtggtgttctt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33720675 |
tcctataatctttaagtcctagagacctagggtgttgttttggaggattgtcccaagtaatgtagtgaagatcatggttggcagtggtgttctt |
33720582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 137 - 286
Target Start/End: Original strand, 9535915 - 9536064
Alignment:
| Q |
137 |
tctctatcaattttatcaagaacaatattatttctcttgaattttctagcgaaaggacggctactcagaaccattttcctataatctttaagtcctagag |
236 |
Q |
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|||||||||||||||||||||||||||| |||| |||| ||||||||||| || |||||| | |||| ||||||||||||||||||||| ||| ||||| |
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| T |
9535915 |
tctctatcaattttatcaagaacaatatcatttttcttaaattttctagcaaatggacggttgctcaaaaccattttcctataatctttgagtgttagag |
9536014 |
T |
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| Q |
237 |
acctagggtgttgttttggaggattgtcccaagtaatgtagtgaagatca |
286 |
Q |
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| || || ||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
9536015 |
atcttggatgttgttttggaggattatcccaagtaatgtagtgtagatca |
9536064 |
T |
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