View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_46 (Length: 309)
Name: NF3547_low_46
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 34583038 - 34582760
Alignment:
| Q |
19 |
ttgacacggttgatgttcatgctcgtgaattaattttcttacatcttagtatgatgacaaaatttgtacaaaaatattgatctgataactatattgattt |
118 |
Q |
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| T |
34583038 |
ttgacacggttgatgttcatgctcgtgaattaattttcttacatcttagtatgatgacaaaatttgtacaaaaatattgatctgataactat--tgattt |
34582941 |
T |
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| Q |
119 |
agttgagaacacattttcatatccactttttaagtctcgtttccttgaacaatccgcttatctgatgatagtaacaaacatgcaaaatgcaccttccttc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34582940 |
agttgagaacacattttcatatccactttttaagtcttgtttccttgaacaatccgcttatctgatgatagtaacaaacatgcaaaatgcaccttccttc |
34582841 |
T |
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| Q |
219 |
tgaagccaactccctgaaggatccattttgttgccttagtgactaacaaccttccttctacgcaaactcaaacagttccct |
299 |
Q |
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| T |
34582840 |
tgaagccaactccctgaaggatccattttgttgcctcagtgactaacaaccttccttcttcgcaaactcaaacagttccct |
34582760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 295
Target Start/End: Complemental strand, 34584482 - 34584402
Alignment:
| Q |
215 |
cttctgaagccaactccctgaaggatccattttgttgccttagtgactaacaaccttccttctacgcaaactcaaacagtt |
295 |
Q |
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| T |
34584482 |
cttctgaagccaactccttgtaggatccattttgttgcctcaatgactaacaaccttccttctatttaagctcaaacagtt |
34584402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 143
Target Start/End: Complemental strand, 34585016 - 34584907
Alignment:
| Q |
35 |
tcatgctcgtgaattaattttcttacatctt---agtatgatgacaaaatttgtacaaaaatattgatctgataactatattgatttagttgagaacaca |
131 |
Q |
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| T |
34585016 |
tcatgctcatgaagtaattttcttccatcttctgagtatgatgccaaaaattgttgaaaaatattgatctgattac--tattgattaagttgaaaacaaa |
34584919 |
T |
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| Q |
132 |
ttttcatatcca |
143 |
Q |
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|||||||||||| |
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| T |
34584918 |
ttttcatatcca |
34584907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 34584583 - 34584527
Alignment:
| Q |
143 |
actttttaagtctcgtttccttgaacaatccgcttatctgatgatagtaacaaacat |
199 |
Q |
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| T |
34584583 |
actttttaagtcctgttttcttgaacagtccacttatccgatgagagtaacaaacat |
34584527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 296
Target Start/End: Complemental strand, 34585914 - 34585831
Alignment:
| Q |
215 |
cttctgaagccaactccctgaaggatccattttgttgccttagtga--ctaacaaccttccttctacgcaaactcaaacagttc |
296 |
Q |
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||||||||| |||||| || ||||| |||||||||| || | ||| |||||||||||||||||| ||| |||||||||||| |
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| T |
34585914 |
cttctgaagacaactcgttgtaggatgcattttgttgtctcaatgagactaacaaccttccttctatgcatgctcaaacagttc |
34585831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 51201290 - 51201188
Alignment:
| Q |
34 |
ttcatgctcgtgaattaattttcttacatcttagtatgatgacaaaatttgtacaaaaatattgatctgataactatattgatttagttgagaacacatt |
133 |
Q |
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|||||| || |||| |||||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||| ||||| | |||| | |||| |||||||| |
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| T |
51201290 |
ttcatgatcatgaagtaattttcttacatcttagtatgatgccaaaaattgaacaaaaatatttatctgattactat-tggattaatttgaaaacacatt |
51201192 |
T |
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| Q |
134 |
ttca |
137 |
Q |
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|||| |
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| T |
51201191 |
ttca |
51201188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 27016028 - 27016102
Alignment:
| Q |
62 |
tcttagtatgatgacaaaatttgtacaaaaatattgatctgataactatattgatttagttgagaacacattttcata |
139 |
Q |
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||||||||||||| ||||||| |||||||||||||||| | || || |||||||| |||||| |||| ||||||||| |
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| T |
27016028 |
tcttagtatgatgccaaaatt-gtacaaaaatattgatttaattac--tattgattaagttgaaaacagattttcata |
27016102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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