View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_47 (Length: 308)
Name: NF3547_low_47
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_47 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 24168662 - 24168969
Alignment:
| Q |
1 |
aactccgaaaataatgtttggttccgtctctttacacccactgttggtggagaagtcgtcggagatggtggtgcaaccaaaacaacctcccttcccgttg |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24168662 |
aactccgaaaataacgtttggttccgtctctttacacccactgttggcggagaagtcgtcggagatggtggtgcaaccaaaacaacctcccttcccgttg |
24168761 |
T |
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| Q |
101 |
tcattttcttccatggtggcggcttcacctatctttgcccctcctctatctactatgatgctttttgtcgtagactctgctgggaaatgtctgttgttgt |
200 |
Q |
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| T |
24168762 |
tcattttcttccacggtggtggcttcacctatctttgcccctcctctatctactatgatgctttttgccgtagactctgccgggaaatatccgttgttgt |
24168861 |
T |
|
| Q |
201 |
tgtctctgtcaactaccgcctcacaccggagcattgctatccatcgcaatacgaagacggagaagctgttttgaaatatttggcggagaataaaatggtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24168862 |
tgtctctgtcaactaccgcctcacaccggagcattgctatccgtcgcaatacgaagacggagaagctgttttgaaatatttggaggagaataaaatggtt |
24168961 |
T |
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| Q |
301 |
ttaccgga |
308 |
Q |
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|||||||| |
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| T |
24168962 |
ttaccgga |
24168969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 24188904 - 24189169
Alignment:
| Q |
1 |
aactccgaaaataatgtttggttccgtctctttacacccactgttggtggagaagtcgtcggagatggtggtgcaaccaaaacaacctcccttcccgttg |
100 |
Q |
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| T |
24188904 |
aactccgaaaacaacctttggttccgtctctttactccaactgttgccggagaagtcaccgaagatggtggttccaccaaaactacctcccttcccgtcg |
24189003 |
T |
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| Q |
101 |
tcattttcttccatggtggcggcttcacctatctttgcccctcctctatctactatgatgctttttgtcgtagactctgctgggaaatgtctgttgttgt |
200 |
Q |
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| T |
24189004 |
tcattttcttccacggtggtggcttcacttttctttcttcttcctcaaacctctacgatgcggtttgtcgtagactctgccgggaaatctccgctgtcat |
24189103 |
T |
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| Q |
201 |
tgtctctgtcaactaccgcctcacaccggagcattgctatccatcgcaatacgaagacggagaagc |
266 |
Q |
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|||||| ||||||||||| || |||| |||||| ||||||| |||||||| |||||||||||||| |
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| T |
24189104 |
tgtctccgtcaactaccgacttgcaccagagcatcgctatccgtcgcaatatgaagacggagaagc |
24189169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 61 - 308
Target Start/End: Original strand, 24151895 - 24152142
Alignment:
| Q |
61 |
ggagatggtggtgcaaccaaaacaacctcccttcccgttgtcattttcttccatggtggcggcttcacctatctttgcccctcctctatctactatgatg |
160 |
Q |
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| T |
24151895 |
ggagatggtggtgccactaaaacaacctcccttcctgtcatcatttacttccacggtggtggcttcagttttctttccccctcctcaatctatcacgatg |
24151994 |
T |
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| Q |
161 |
ctttttgtcgtagactctgctgggaaatgtctgttgttgttgtctctgtcaactaccgcctcacaccggagcattgctatccatcgcaatacgaagacgg |
260 |
Q |
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|||| || |||||||||||| ||||| | | | |||||| |||||||||||||||||||| |||||||||||| | ||||| |||||||| || || || |
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| T |
24151995 |
ctttatgccgtagactctgcagggaagttttcgctgttgtcgtctctgtcaactaccgccttacaccggagcatagatatccgtcgcaatatgatgatgg |
24152094 |
T |
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| Q |
261 |
agaagctgttttgaaatatttggcggagaataaaatggttttaccgga |
308 |
Q |
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||| ||||| |||||| ||||| |||||||||| |||||||||||| |
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| T |
24152095 |
agaggctgtgctgaaatttttggaagagaataaaacggttttaccgga |
24152142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 266
Target Start/End: Original strand, 24179102 - 24179363
Alignment:
| Q |
5 |
ccgaaaataatgtttggttccgtctctttacacccactgttggtggagaagtcgtcggagatggtggtgcaaccaaaacaacctcccttcccgttgtcat |
104 |
Q |
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|||||||||| |||||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||| |||||| ||||||||||||| || ||||| |
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| T |
24179102 |
ccgaaaataacgtttggtttcgtctctttacccccactgttgccggagaagtcaccggagatggtggtgccaccaaagcaacctcccttcctgtcgtcat |
24179201 |
T |
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| Q |
105 |
tttcttccatggtggcggcttcacctatctttgcccctcctctatctactatgatgctttttgtcgtagactctgctgggaaatgtctgttgttgttgtc |
204 |
Q |
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||||||||| || || |||| ||| | ||||| || ||||| | | ||| || ||| |||| |||||||||||| ||||||| || | ||| ||||| |
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| T |
24179202 |
tttcttccacggcggtggctacacttttctttctccttcctcgaacctctacgacgctgtttgccgtagactctgccgggaaatctccgctgtcattgtc |
24179301 |
T |
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| Q |
205 |
tctgtcaactaccgcctcacaccggagcattgctatccatcgcaatacgaagacggagaagc |
266 |
Q |
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|| ||||||||||| || ||||| |||||| | ||||| || ||||| |||||||||||||| |
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| T |
24179302 |
tccgtcaactaccgacttacaccagagcatcggtatccgtcacaatatgaagacggagaagc |
24179363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 195 - 308
Target Start/End: Original strand, 24112741 - 24112854
Alignment:
| Q |
195 |
tgttgttgtctctgtcaactaccgcctcacaccggagcattgctatccatcgcaatacgaagacggagaagctgttttgaaatatttggcggagaataaa |
294 |
Q |
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|||||| ||||| ||||||||||| | ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24112741 |
tgttgtcgtctccgtcaactaccgtcacacaccggagcatcggtatccatcgcaatacgaagacggagaagctgttttgaaatatttggacgagaataaa |
24112840 |
T |
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| Q |
295 |
atggttttaccgga |
308 |
Q |
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| T |
24112841 |
acggttttaccgga |
24112854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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