View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_5 (Length: 658)
Name: NF3547_low_5
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_5 |
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| [»] chr1 (5 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0458 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 604; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 15 - 658
Target Start/End: Original strand, 744831 - 745474
Alignment:
| Q |
15 |
cagagatgaattgggccacggtatatctattggcctccagagttgaagtaatgacccgatacccgggccatttgacccgttgtccgatagctgcgcccgg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
744831 |
cagagatgaattgggccacggtatatctattggcctccagagttgaagtaatgacccgatacccgggccatttgacccgttgtccgatagccgcgcccgg |
744930 |
T |
|
| Q |
115 |
tccaaaattcatgtactcaccataatacaaagtgtttaaagcaaagtcaccattccattccaaccatccatgtggatgcacatgatcacccatataggac |
214 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
744931 |
tccaaaattcatgtactcaccataatacaaagtttttaaagcaaagtcaccattccattccaaccatccatgtggatgcacatgatcacccatataggac |
745030 |
T |
|
| Q |
215 |
aacatatatacagtcctagaatacattttccatggacgacccaaatatgtttcaaggctgacctttgatgaggtgagagccggggcaggtaggatccgac |
314 |
Q |
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| T |
745031 |
aacatatatacagtcctagaatacattttccatggacgacccaaatatgtttcaatgctgccctttgatgaggctagatccggggcaggtaggatccgac |
745130 |
T |
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| Q |
315 |
aatcatgaatggatatacccgtattttgattcgggtcttttctattttgagctgtgatagtgttcttttgttgggccataggcttacgtgcataaatgtt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
745131 |
aatcatgaatggatatacccgtattttgattcgggtcttttctattttgagctgtgatagtgttcttttgttgggccataggcttacgtgcataaatgtt |
745230 |
T |
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| Q |
415 |
acatttttgaaaaactactgcagcatttccaaatataaaatctaccgtaccataaatgttgcattcacggaaaaattgacggttggaatgtacatagcat |
514 |
Q |
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| T |
745231 |
acatttttgaaaaactactgcagcatttccaaatataaaatctaccgtgccataaatgttgcattcacggaaaaattgacggttggaatgtacatagcat |
745330 |
T |
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| Q |
515 |
gcgtcttggtaaccaataatgttgcagcggtacaccaccgcgtgatcagatccgacacggagggccaccgcttggtgcttctccggtccggcgtagttct |
614 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
745331 |
gcgtcttggtaaccaacaatgttgcagcggtacaccaccgcgtgatcggatccgacacggagggccaccgcttggtgcttctccggtccggcgtagttct |
745430 |
T |
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| Q |
615 |
cgaatgtaatgtcacgtgccatgaacccaggaccactagcagct |
658 |
Q |
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| T |
745431 |
cgaatgtaatgtcacgtgccatgaacccaggaccactagcagct |
745474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 450
Target Start/End: Original strand, 24061078 - 24061122
Alignment:
| Q |
406 |
ataaatgttacatttttgaaaaactactgcagcatttccaaatat |
450 |
Q |
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| T |
24061078 |
ataaatgttacaattttgcaaaacaactgcaccatttccaaatat |
24061122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 450
Target Start/End: Complemental strand, 39451049 - 39451005
Alignment:
| Q |
406 |
ataaatgttacatttttgaaaaactactgcagcatttccaaatat |
450 |
Q |
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|||||||||||| ||||| ||||| |||||| ||||||||||||| |
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| T |
39451049 |
ataaatgttacaattttgcaaaacaactgcaccatttccaaatat |
39451005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 450
Target Start/End: Complemental strand, 39460436 - 39460392
Alignment:
| Q |
406 |
ataaatgttacatttttgaaaaactactgcagcatttccaaatat |
450 |
Q |
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| T |
39460436 |
ataaatgttacaattttgcaaaacaactgcaccatttccaaatat |
39460392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 450
Target Start/End: Complemental strand, 39471921 - 39471877
Alignment:
| Q |
406 |
ataaatgttacatttttgaaaaactactgcagcatttccaaatat |
450 |
Q |
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|||||||||||| ||||| ||||| |||||| ||||||||||||| |
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| T |
39471921 |
ataaatgttacaattttgcaaaacaactgcaccatttccaaatat |
39471877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 323 - 658
Target Start/End: Complemental strand, 41573756 - 41573421
Alignment:
| Q |
323 |
atggatatacccgtattttgattcgggtcttttctattttgagctgtgatagtgttcttttgttgggccataggcttacgtgcataaatgttacattttt |
422 |
Q |
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||||||||||| || || ||||| ||||||||||| ||||| |||||||| ||||| ||||| | || ||||||||| | |||||| | | |||| |||| |
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| T |
41573756 |
atggatataccagtgttctgatttgggtcttttctgttttgggctgtgatggtgtttttttggtagggcataggctttcttgcatagaggctacagtttt |
41573657 |
T |
|
| Q |
423 |
gaaaaactactgcagcatttccaaatataaaatctaccgtaccataaatgttgcattcacggaaaaattgacggttggaatgtacatagcatgcgtcttg |
522 |
Q |
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||||||| ||||||||||| |||||||| || ||||||||||| ||||||| ||||||||| |||||||||| || |||||| | || || |||||| |
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| T |
41573656 |
gaaaaacaactgcagcattgccaaatatgaagtctaccgtaccgtaaatgtcacattcacggtaaaattgacgatttgaatgtgcgtacattgtgtcttg |
41573557 |
T |
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| Q |
523 |
gtaaccaataatgttgcagcggtacaccaccgcgtgatcagatccgacacggagggccaccgcttggtgcttctccggtccggcgtagttctcgaatgta |
622 |
Q |
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||| || || | |||||| ||||| |||||||| || || ||| ||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |
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| T |
41573556 |
gtatccgatgacgttgcaacggtaaaccaccgcatggtccgatgagacacggagggccaccgcttggtgctttgctggtccggcgtagttctcaaatgtc |
41573457 |
T |
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| Q |
623 |
atgtcacgtgccatgaacccaggaccactagcagct |
658 |
Q |
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||||| ||| || || || ||||||||||||||| |
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| T |
41573456 |
atgtcttttgcaataaaacctggaccactagcagct |
41573421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 41574059 - 41573814
Alignment:
| Q |
20 |
atgaattgggccacggtatatctattggcctccagagttgaagtaatgacccgatacccgggccatttgacccgttgtccgatagctgcgcccggtccaa |
119 |
Q |
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|||||||||||||| || ||||||| || |||| || || ||||| ||||||||||| ||||| || || ||||| || |||||| | || |||||| |
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| T |
41574059 |
atgaattgggccaccgtgaatctatttgcttccacggtggatgtaataacccgatacccaggccactttacacgttgcccaatagctccaccaggtccat |
41573960 |
T |
|
| Q |
120 |
aattcatgtactcaccataatacaaagtgtttaaagcaaagtcaccattccattccaaccatccatgtggatgcacatgatcacccatataggacaacat |
219 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||| |||||| || ||||||||| ||||||| |||||||| ||||| || || ||||| |
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| T |
41573959 |
aattcatgtattcaccataatacaaagtgtctaaagcaaatgttgtattccactctaaccatccacgtggatgtacatgatctcccatgtaagataacat |
41573860 |
T |
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| Q |
220 |
atatacagtcctagaatacattttccatggacgacccaaatatgtt |
265 |
Q |
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|| || || ||||| || | |||||||||||| || | ||||||| |
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| T |
41573859 |
gtacactgttctagagtatagtttccatggacggccaagatatgtt |
41573814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 480
Target Start/End: Original strand, 44488615 - 44488676
Alignment:
| Q |
419 |
ttttgaaaaactactgcagcatttccaaatataaaatctaccgtaccataaatgttgcattc |
480 |
Q |
| |
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||||| ||||| ||||| || ||||||||||||||||||| || |||||||||| |||||| |
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| T |
44488615 |
ttttgcaaaacaactgcggcgtttccaaatataaaatctattgttccataaatgtcgcattc |
44488676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 450
Target Start/End: Original strand, 12613 - 12657
Alignment:
| Q |
406 |
ataaatgttacatttttgaaaaactactgcagcatttccaaatat |
450 |
Q |
| |
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|||||||||||| ||||| ||||| |||||| ||||||||||||| |
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| T |
12613 |
ataaatgttacaattttgcaaaacaactgcaccatttccaaatat |
12657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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