View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_51 (Length: 300)
Name: NF3547_low_51
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_51 |
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| [»] scaffold0459 (2 HSPs) |
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| [»] scaffold0366 (2 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 6799 - 6941
Alignment:
| Q |
9 |
gcataggggattgaggcagaactccatttgaaggaggcaaaccaattagtccacaaagcaaagtctaaaagtttgattcaaagaaaagcattagttcggt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6799 |
gcataggggattgaggcagaactccatttgaaggaggcaaaccaattagtccacaaagcaaagtctaaaagtttgattcaaagaaaagcattagttcggt |
6898 |
T |
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| Q |
109 |
tggtatcattaatgtgagtgacaattaaacaactccatacaag |
151 |
Q |
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| T |
6899 |
tggtatcattaatgtgagtgacaattaaacaactccatacaag |
6941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 6969 - 7076
Alignment:
| Q |
179 |
ccatgaaacctagtaacaatatgtcatagtgatatgccgaagatttcttgagattgaattccttttgttgcgccagttgggatgcaacactatggtcaaa |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6969 |
ccatgaaacctagtaacaatatgtcatagtgatatgccgaagatttcttgagattgaattccttttgttgcgcgagttgggatgcaacactatggtcaaa |
7068 |
T |
|
| Q |
279 |
gaagtaaa |
286 |
Q |
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|||||||| |
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| T |
7069 |
gaagtaaa |
7076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 6797 - 6939
Alignment:
| Q |
9 |
gcataggggattgaggcagaactccatttgaaggaggcaaaccaattagtccacaaagcaaagtctaaaagtttgattcaaagaaaagcattagttcggt |
108 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6797 |
gcataggggattgaggcagaactccatttgaaggaggcaaaccaattagtccacaaagcaaagtctaaaagtttgattcaaagaaaagcattagttcggt |
6896 |
T |
|
| Q |
109 |
tggtatcattaatgtgagtgacaattaaacaactccatacaag |
151 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6897 |
tggtatcattaatgtgagtgacaattaaacaactccatacaag |
6939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 6967 - 7074
Alignment:
| Q |
179 |
ccatgaaacctagtaacaatatgtcatagtgatatgccgaagatttcttgagattgaattccttttgttgcgccagttgggatgcaacactatggtcaaa |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6967 |
ccatgaaacctagtaacaatatgtcatagtgatatgccgaagatttcttgagattgaattccttttgttgcgccagttgggatgcaacactatggtcaaa |
7066 |
T |
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| Q |
279 |
gaagtaaa |
286 |
Q |
| |
|
|||||||| |
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| T |
7067 |
gaagtaaa |
7074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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