View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_55 (Length: 296)
Name: NF3547_low_55
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_55 |
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| [»] scaffold0159 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 5767624 - 5767900
Alignment:
| Q |
17 |
aggtttgcattactttttgttttgtccattaaatttaggggattataaatagtggaaatcatgagattaatttctctctttcttttatctatgtaggtga |
116 |
Q |
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| T |
5767624 |
aggtttgcattactttttgttttgtccattaaatttaggggattataaatagtggaaatcatgagattaatttctttctttcttttatctatgtaggtga |
5767723 |
T |
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| Q |
117 |
tgtatgaagaggcaagtcaggtggcaaatgatgctgttggtagcataagaactgttgcatcatttaatgcagaatcaaaggtgatggatatgtaccagaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5767724 |
tgtatgaagaggcaagtcaggtggcaaatgatgctgttggtagcataagaactgttgcatcatttaatgcagaatcaaaggtgatggatatgtaccagaa |
5767823 |
T |
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| Q |
217 |
gaaatgttcagggccagaaaaacaaggtgttcgttcagggcttgtgagtggtgcaggatttggtttcttttctgtcg |
293 |
Q |
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| T |
5767824 |
gaaatgttcagggccagaaaaacaaggtgttcattcagggcttgtgagtggtgcaggatttggtttctcttttgtcg |
5767900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 110 - 284
Target Start/End: Original strand, 5825837 - 5826011
Alignment:
| Q |
110 |
taggtgatgtatgaagaggcaagtcaggtggcaaatgatgctgttggtagcataagaactgttgcatcatttaatgcagaatcaaaggtgatggatatgt |
209 |
Q |
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| T |
5825837 |
taggtgatgtatgaagaggcaagtcaggttgcaaatgatgctgttggtagcatcagaactgttgcatcattttgtgctgaacaaaaggtgatggatatgt |
5825936 |
T |
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| Q |
210 |
accagaagaaatgttcagggccagaaaaacaaggtgttcgttcagggcttgtgagtggtgcaggatttggtttct |
284 |
Q |
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| T |
5825937 |
accagaaaaaatgttcagcaccagaaaaacaaggtgttaggttgggacttgttagtggtataggattcggtttct |
5826011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 98 - 279
Target Start/End: Complemental strand, 5830727 - 5830546
Alignment:
| Q |
98 |
cttttatctatgtaggtgatgtatgaagaggcaagtcaggtggcaaatgatgctgttggtagcataagaactgttgcatcatttaatgcagaatcaaagg |
197 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||| |||||||||||||| |
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| T |
5830727 |
cttttatctgtgtaggttatgtatgaagaggcaagtcaggtggcaaatgatgccgttagtagcatcagaactgttgcatcattttgtgcagaatcaaagg |
5830628 |
T |
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| Q |
198 |
tgatggatatgtaccagaagaaatgttcagggccagaaaaacaaggtgttcgttcagggcttgtgagtggtgcaggatttgg |
279 |
Q |
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| T |
5830627 |
tgatggacatgtacagtaaaaaatgtttaggcccagcgaaacaaggagttcgcttggggcttgttagtggtataggatttgg |
5830546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 119 - 216
Target Start/End: Original strand, 5794674 - 5794771
Alignment:
| Q |
119 |
tatgaagaggcaagtcaggtggcaaatgatgctgttggtagcataagaactgttgcatcatttaatgcagaatcaaaggtgatggatatgtaccagaa |
216 |
Q |
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| T |
5794674 |
tatgaagaggcaagtcaggttgcaaatgatgctgttggtagcatcagaactgttgcatcatttagtgctgaacaaaaggtgatggatatgtaccagaa |
5794771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 5781279 - 5781349
Alignment:
| Q |
111 |
aggtgatgtatgaagaggcaagtcaggtggcaaatgatgctgttggtagcataagaactgttgcatcattt |
181 |
Q |
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| T |
5781279 |
aggtgatgtatgaagaggcaagtcaggttgcaaatgatgctgttggtagcatcagaactgttgcatcattt |
5781349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 110 - 282
Target Start/End: Complemental strand, 29328242 - 29328070
Alignment:
| Q |
110 |
taggtgatgtatgaagaggcaagtcaggtggcaaatgatgctgttggtagcataagaactgttgcatcatttaatgcagaatcaaaggtgatggatatgt |
209 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||| ||||||||||||||||||||| |||| |
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| T |
29328242 |
taggttatgtatgaagaggcaagtcaggtggcaagtgatgctgtcagtagcatcagaactgttgcgtcattttgtgcagaatcaaaggtgatggacatgt |
29328143 |
T |
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| Q |
210 |
accagaagaaatgttcagggccagaaaaacaaggtgttcgttcagggcttgtgagtggtgcaggatttggttt |
282 |
Q |
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| T |
29328142 |
acgggaaaaaatgttctggaccagcgaaacaaggtgttcgctcggggcttgttagtggtgtaggatttggttt |
29328070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 26611 - 26681
Alignment:
| Q |
111 |
aggtgatgtatgaagaggcaagtcaggtggcaaatgatgctgttggtagcataagaactgttgcatcattt |
181 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26611 |
aggtgatgtatgaagaggcaagtcaggttgcaaatgatgctgttggtagcatcagaactgttgcatcattt |
26681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 51158594 - 51158651
Alignment:
| Q |
117 |
tgtatgaagaggcaagtcaggtggcaaatgatgctgttggtagcataagaactgttgc |
174 |
Q |
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| T |
51158594 |
tgtatgaagaagcaagtcaagtggcaaatgatgctgtagggagcataagaacagttgc |
51158651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 51147450 - 51147494
Alignment:
| Q |
128 |
gcaagtcaggtggcaaatgatgctgttggtagcataagaactgtt |
172 |
Q |
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| T |
51147450 |
gcaagtcaagtggcaaatgatgctgtagggagtataagaactgtt |
51147494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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