View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_65 (Length: 259)
Name: NF3547_low_65
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 31098659 - 31098416
Alignment:
| Q |
1 |
aagagaggatgagcaggtggttgcgaaggcagtgggagattgtgaccaaggagggagtattttttgcatcttgatggaggtctgttgcaacaaggtaaag |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||| |
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| T |
31098659 |
aagagaggatgagcaggtggttgcaaaggcagtgggagattgtgaccaaggagggagtaatatttgcatcttgatggaggtctgttgcaacgaggtaaag |
31098560 |
T |
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| Q |
101 |
ccacgagttttaagaaaatgagagctatgtactgcgagaagagaaagatgcgtttgtttgagatggcttattattgaagaagtcacgaccatgagatggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31098559 |
ccacgagttttaagaaaatgagagctatgtactgcgagaagagaaagatgcgtttgtttgagatggcttattattgaagaagtcacgaccatgagatggt |
31098460 |
T |
|
| Q |
201 |
gttgggagaagaccgtctttgccgccgcagcattgcaaaatttg |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31098459 |
gttgggagaagaccgtctttgccgccgcagcattgcaaaatttg |
31098416 |
T |
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