View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_67 (Length: 254)
Name: NF3547_low_67
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_67 |
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Alignment Details
Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 8839232 - 8839152
Alignment:
| Q |
73 |
gcattgtgtgacgagaaggaagcaaaagtaaacgatccaactacgtagcaaatttggaaaatataaatcgttatctatata |
153 |
Q |
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| T |
8839232 |
gcattgtgtgacgagaaggaagcaaaagtaaacgatccaactacgtaccaaatttggaaaatataaatcgttatctatata |
8839152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 8839355 - 8839292
Alignment:
| Q |
79 |
tgtgacgagaaggaagcaaaagtaaacgatccaactacgtagcaaatttggaaaatataaatcg |
142 |
Q |
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| T |
8839355 |
tgtgacgagaaggaagcaaaagtaaacgatccaagtaggtaccaaatttggaaaatataaatcg |
8839292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 8839341 - 8839282
Alignment:
| Q |
13 |
agcaaaggtaaacgatccaagtaggtaccaaatttggaaaatataaataaagttttctat |
72 |
Q |
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| T |
8839341 |
agcaaaagtaaacgatccaagtaggtaccaaatttggaaaatataaatcgagttttctat |
8839282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 8839212 - 8839165
Alignment:
| Q |
13 |
agcaaaggtaaacgatccaagtaggtaccaaatttggaaaatataaat |
60 |
Q |
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| T |
8839212 |
agcaaaagtaaacgatccaactacgtaccaaatttggaaaatataaat |
8839165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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