View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_7 (Length: 534)
Name: NF3547_low_7
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 19 - 522
Target Start/End: Complemental strand, 45314087 - 45313573
Alignment:
| Q |
19 |
tgcaacaacaacaacctccaccaccatcaccagttcatccctcccgtcatcctcttgtccgctccagacacccagcacgtcgataaccaagacgtttttc |
118 |
Q |
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| T |
45314087 |
tgcaacaacaacaacctccaccaccatcaccagttcatccctcccgtcatcctcttgtccgctccagacacccagcacgtcgataaccaagacgtttttc |
45313988 |
T |
|
| Q |
119 |
acactccgccggatgacccaccgcttccatcttccgtcattgatgttgttgatgcttctcagtgagtttcctgagataaatcctgatgattttagcattt |
218 |
Q |
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| T |
45313987 |
acactccgccggatgacccaccgcttccatcttccgtcattgatgttgttgatgcttctcagtgagtttcctgagataaatccggatgattttagcattt |
45313888 |
T |
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| Q |
219 |
tggata-----------------atgttgataaggctcctatgaaaaaattgaaatttgggtttgtttctttggagaaaaatgttagaaacccaacaagc |
301 |
Q |
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| T |
45313887 |
tggataggatagggcaatttctaatgttgataaggctcctatgaaaaaattgaaatttgggtttgtttctttggagaaaaatgtt-gaaacccaacaagc |
45313789 |
T |
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| Q |
302 |
tgttcaaaatgatgctgaggatattaacatgattgatgttgagggaaataagtcaagtcaagtcaagaggaggagattatggaaatttctagaatgcgca |
401 |
Q |
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| T |
45313788 |
tgttcaaaatgatgctgaggatattaacatgattgatgttgagggaaataagtcaagtcaag-----aggaggagattatggaaatttctagaatgcgca |
45313694 |
T |
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| Q |
402 |
agggtccggtgttggatttgatgccgctcttctttcgagaaagaaactgcaaatgaaagggggtccagggaggataaggagaaggagacggttactgttt |
501 |
Q |
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| T |
45313693 |
agggtccggtgttggatttgatgccgctcttctttcgagaaagcaactgcaaatgaaagggggtccggggaggataaggagaaggagacggttactgttt |
45313594 |
T |
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| Q |
502 |
ttgatattaacctatgatgat |
522 |
Q |
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| T |
45313593 |
ttgatattaacctatgatgat |
45313573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 53 - 162
Target Start/End: Original strand, 54631244 - 54631353
Alignment:
| Q |
53 |
tcatccctcccgtcatcctcttgtccgctccagacacccagcacgtcgataaccaagacgtttttcacactccgccggatgacccaccgcttccatcttc |
152 |
Q |
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| T |
54631244 |
tcatccctcccatcatcccattgtacgctccagacacccagcacgtcgataaccaagacgtttttcacactccgccggaggacccaccgcttccatcttc |
54631343 |
T |
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| Q |
153 |
cgtcattgat |
162 |
Q |
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| T |
54631344 |
cgtcattgat |
54631353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 255 - 357
Target Start/End: Original strand, 54631625 - 54631729
Alignment:
| Q |
255 |
aatttgggtttgtttctttggagaaaaatgttagaaacccaacaa---gctgttcaaaatgatgctgaggatattaacatgattgatgttgagggaaata |
351 |
Q |
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|||||||||||| |||||||||| |||||||| |||||||||||| | |||||||||||||||||||||| |||||||| |||||||||||||||| | |
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| T |
54631625 |
aatttgggtttgattctttggaggaaaatgtt-gaaacccaacaacaagttgttcaaaatgatgctgaggatgttaacatggttgatgttgagggaaaca |
54631723 |
T |
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| Q |
352 |
agtcaa |
357 |
Q |
| |
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|||||| |
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| T |
54631724 |
agtcaa |
54631729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 427 - 487
Target Start/End: Original strand, 54631733 - 54631793
Alignment:
| Q |
427 |
gctcttctttcgagaaagaaactgcaaatgaaagggggtccagggaggataaggagaagga |
487 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| |
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| T |
54631733 |
gctcttctttcgagaaagcgactgcaaatgaaagggggtctggggaggataaggataagga |
54631793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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