View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3547_low_71 (Length: 250)

Name: NF3547_low_71
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3547_low_71
NF3547_low_71
[»] chr1 (18 HSPs)
chr1 (15-250)||(24983973-24984198)
chr1 (15-172)||(3355473-3355620)
chr1 (15-172)||(28234872-28235019)
chr1 (15-172)||(44257843-44257990)
chr1 (15-184)||(42866351-42866510)
chr1 (17-172)||(9293697-9293842)
chr1 (15-172)||(12792735-12792882)
chr1 (15-172)||(46535157-46535304)
chr1 (15-172)||(48303086-48303233)
chr1 (22-172)||(1846797-1846938)
chr1 (16-124)||(50655520-50655628)
chr1 (15-117)||(4225008-4225110)
chr1 (20-122)||(5384697-5384799)
chr1 (18-117)||(7156160-7156259)
chr1 (27-94)||(16914441-16914508)
chr1 (17-122)||(37034810-37034906)
chr1 (15-47)||(52585221-52585253)
chr1 (17-99)||(32364196-32364278)
[»] chr3 (28 HSPs)
chr3 (15-212)||(29025332-29025529)
chr3 (15-172)||(30464969-30465116)
chr3 (15-196)||(44832476-44832647)
chr3 (18-172)||(23241745-23241889)
chr3 (15-172)||(39850768-39850915)
chr3 (22-172)||(10259097-10259237)
chr3 (15-172)||(2849148-2849295)
chr3 (15-172)||(33634956-33635103)
chr3 (15-172)||(26725617-26725763)
chr3 (15-172)||(11335545-11335692)
chr3 (44-172)||(11676143-11676261)
chr3 (15-115)||(33987149-33987249)
chr3 (15-122)||(52404273-52404380)
chr3 (15-172)||(37599769-37599903)
chr3 (15-125)||(45158533-45158643)
chr3 (15-125)||(55258017-55258114)
chr3 (15-115)||(5123827-5123927)
chr3 (18-117)||(45096365-45096464)
chr3 (60-115)||(27002631-27002686)
chr3 (131-212)||(5123923-5124002)
chr3 (123-175)||(41462234-41462286)
chr3 (22-94)||(50007245-50007317)
chr3 (22-79)||(51229476-51229533)
chr3 (15-47)||(11018777-11018809)
chr3 (17-125)||(11575069-11575177)
chr3 (15-47)||(42907842-42907874)
chr3 (53-125)||(44201210-44201282)
chr3 (17-117)||(51537117-51537217)
[»] chr5 (16 HSPs)
chr5 (15-212)||(14635418-14635615)
chr5 (9-212)||(3752521-3752714)
chr5 (17-212)||(27194615-27194800)
chr5 (15-172)||(40143977-40144124)
chr5 (15-172)||(36745750-36745897)
chr5 (15-196)||(26166069-26166240)
chr5 (15-122)||(8761017-8761124)
chr5 (15-172)||(38040696-38040843)
chr5 (15-172)||(35758108-35758245)
chr5 (17-117)||(29293381-29293481)
chr5 (123-172)||(6514364-6514413)
chr5 (18-125)||(39051855-39051962)
chr5 (66-125)||(389633-389692)
chr5 (15-125)||(6273201-6273311)
chr5 (139-172)||(8760987-8761020)
chr5 (123-175)||(33498278-33498330)
[»] chr6 (11 HSPs)
chr6 (15-212)||(21289623-21289810)
chr6 (15-172)||(24068080-24068227)
chr6 (15-172)||(22351135-22351282)
chr6 (15-115)||(30269666-30269766)
chr6 (21-122)||(13630274-13630375)
chr6 (17-212)||(31513219-31513401)
chr6 (18-111)||(8464357-8464450)
chr6 (130-172)||(30269761-30269803)
chr6 (41-212)||(31504593-31504751)
chr6 (139-196)||(13630372-13630429)
chr6 (17-79)||(21528807-21528869)
[»] chr4 (19 HSPs)
chr4 (15-212)||(7648095-7648282)
chr4 (15-171)||(55497526-55497672)
chr4 (15-172)||(23611420-23611567)
chr4 (18-115)||(11792460-11792557)
chr4 (15-125)||(1936427-1936537)
chr4 (15-122)||(25232594-25232701)
chr4 (15-125)||(12704576-12704686)
chr4 (141-212)||(9374878-9374949)
chr4 (15-117)||(55675493-55675595)
chr4 (17-99)||(8260981-8261063)
chr4 (17-99)||(8274398-8274480)
chr4 (129-212)||(8260890-8260971)
chr4 (129-212)||(8274307-8274388)
chr4 (18-117)||(28359603-28359702)
chr4 (130-172)||(11792552-11792594)
chr4 (17-127)||(44352162-44352272)
chr4 (18-91)||(24776120-24776193)
chr4 (54-127)||(29695350-29695423)
chr4 (15-47)||(8132864-8132896)
[»] chr7 (18 HSPs)
chr7 (15-212)||(44605775-44605962)
chr7 (15-172)||(36099571-36099718)
chr7 (15-172)||(29983308-29983455)
chr7 (15-172)||(36858206-36858353)
chr7 (15-172)||(11734125-11734272)
chr7 (15-125)||(47423518-47423628)
chr7 (15-125)||(16216925-16217035)
chr7 (15-125)||(10198380-10198490)
chr7 (17-115)||(33628189-33628287)
chr7 (63-172)||(14801875-14801974)
chr7 (63-172)||(15248867-15248966)
chr7 (15-125)||(24096640-24096750)
chr7 (17-125)||(20131273-20131381)
chr7 (17-125)||(16198629-16198737)
chr7 (120-172)||(47423613-47423667)
chr7 (15-99)||(46170714-46170798)
chr7 (15-47)||(9822592-9822624)
chr7 (15-47)||(10724517-10724549)
[»] chr8 (22 HSPs)
chr8 (15-184)||(42063535-42063694)
chr8 (15-172)||(36658580-36658727)
chr8 (15-172)||(40485436-40485583)
chr8 (15-172)||(41726241-41726388)
chr8 (15-172)||(5969886-5970033)
chr8 (15-172)||(3655930-3656077)
chr8 (15-172)||(19726596-19726743)
chr8 (15-172)||(13487033-13487180)
chr8 (15-172)||(14910168-14910315)
chr8 (15-172)||(30360528-30360675)
chr8 (15-172)||(31008418-31008565)
chr8 (20-122)||(27679187-27679289)
chr8 (15-125)||(39375187-39375297)
chr8 (15-122)||(18656555-18656662)
chr8 (15-122)||(4455278-4455385)
chr8 (15-122)||(44056425-44056532)
chr8 (15-111)||(39024466-39024562)
chr8 (18-100)||(36833980-36834062)
chr8 (15-111)||(12639292-12639388)
chr8 (133-169)||(12639254-12639290)
chr8 (122-174)||(1916513-1916565)
chr8 (15-47)||(6545756-6545788)
[»] chr2 (19 HSPs)
chr2 (15-172)||(7153509-7153656)
chr2 (15-172)||(37314825-37314972)
chr2 (15-172)||(39061812-39061959)
chr2 (15-172)||(39678377-39678524)
chr2 (15-172)||(17513093-17513240)
chr2 (15-172)||(29523774-29523921)
chr2 (15-134)||(23293097-23293216)
chr2 (18-172)||(24128829-24128973)
chr2 (15-172)||(31900478-31900625)
chr2 (15-122)||(14885364-14885471)
chr2 (15-125)||(35305216-35305326)
chr2 (17-66)||(3988780-3988829)
chr2 (17-94)||(27905697-27905774)
chr2 (53-125)||(39761779-39761851)
chr2 (122-172)||(29781586-29781636)
chr2 (22-79)||(7501459-7501516)
chr2 (15-80)||(20907144-20907209)
chr2 (15-47)||(19882012-19882044)
chr2 (120-156)||(39761758-39761794)
[»] scaffold0070 (1 HSPs)
scaffold0070 (15-172)||(12794-12941)
[»] scaffold0231 (1 HSPs)
scaffold0231 (15-134)||(10944-11063)
[»] scaffold0036 (1 HSPs)
scaffold0036 (14-172)||(51981-52129)
[»] scaffold0242 (2 HSPs)
scaffold0242 (15-115)||(17782-17882)
scaffold0242 (130-188)||(17729-17787)
[»] scaffold0043 (1 HSPs)
scaffold0043 (17-117)||(64420-64520)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 24984198 - 24983973
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24984198 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 24984099  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataataacccctgtaaaataagataaaaattatccaacaataatatt 214  Q
    |||||||||||          ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  24984098 taactcggatt----------gaatcggtgactcggtcactttagaaactaaaataatgacccctgtaaaataagataaaaactatccaacaataatatt 24984009  T
Q  215 gaaccggtctagcttctgacccttctatccaacaat 250  Q
    ||||||||||||||||||||||||||||||||||||    
T  24984008 gaaccggtctagcttctgacccttctatccaacaat 24983973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 3355473 - 3355620
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||         
T  3355473 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataattcggtccttagattaaatttatatagttatataac----- 3355567  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3355568 -----cggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 3355620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 28234872 - 28235019
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||         
T  28234872 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaac----- 28234966  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28234967 -----cggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 28235019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 44257843 - 44257990
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||          
T  44257843 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaa------ 44257936  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44257937 ----tcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 44257990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 42866351 - 42866510
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||         
T  42866351 gagtcattggtcgaaccgcatgactgaaccggaatcactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaac----- 42866445  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataataacccctgtaaa 184  Q
         |||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||    
T  42866446 -----cggattaattcggattgaatcggtgactcggtcactttagaaattaaaataatgacctctgtaaa 42866510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 9293697 - 9293842
Alignment:
Q  17 gtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggatta 116  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||            
T  9293697 gtcaatggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaa-------- 9293788  T
Q  117 actcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9293789 --tcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 9293842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 12792735 - 12792882
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||         
T  12792735 gagtcattggtcgaaccgcatgactgaatcagaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaac----- 12792829  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
         |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12792830 -----cggattaactcggattgagtcggtgactcggtcactttagaaactaaaataat 12792882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 46535304 - 46535157
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  46535304 gagtcattggtcgaaccgcatgactgaatcggaaccattcggatgactcggttagataactcggtccttagattaaatttatatagttattaaaccggat 46535205  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||||||          |||||||||||||||||||||||||||||||||||||||||    
T  46535204 taactcg----------gattgaatcggtgactcggtcactttagaaactaaaataat 46535157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 48303233 - 48303086
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||| || |||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48303233 gagtcattagtggaaccgcatgactgaatcagaatcactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaaccggat 48303134  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||          |||| ||||||||||||||||||||||||||||||||||||||||    
T  48303133 taa----------ctcgaattgaatcggtgactcggtcactttagaaactaaaataat 48303086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 1846938 - 1846797
Alignment:
Q  22 tggtcgaaccgc-atgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggattaactc 120  Q
    |||||||||| | ||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1846938 tggtcgaaccactatgactgaatcgaaaccactcgaatgactcggttagataactcggtccttagattaaatttatatagttatttaaccggattaactc 1846839  T
Q  121 ggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |          |||||||||||||||||||||||||||||||||||||||||    
T  1846838 g----------gattgaatcggtgactcggtcactttagaaactaaaataat 1846797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 50655520 - 50655628
Alignment:
Q  16 agtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggatt 115  Q
    |||||||| |||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50655520 agtcattgatcgaacggcatgactgaatcggaaccactcggatgacttggttagataactcggtccttagattaaatttatatagttatttaaccggatt 50655619  T
Q  116 aactcggat 124  Q
    || ||||||    
T  50655620 aaatcggat 50655628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 4225110 - 4225008
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||||||| || | ||||||||||||||||| ||| |||||||||    
T  4225110 gagtcattggttgaaccgcataactgaaccggatcaactcggatgactcggttagataactcgttcttgagattaaatttatatagctatttaaccggat 4225011  T
Q  115 taa 117  Q
    |||    
T  4225010 taa 4225008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 5384799 - 5384697
Alignment:
Q  20 attggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggattaact 119  Q
    |||||||||||||||||||||||||||| | ||||||||| ||| |||||||||||||||| | ||||||||||||||||| ||| |||||||||||| |    
T  5384799 attggtcgaaccgcatgactgaaccggatcaactcggatggctcagttagataactcggtcttgagattaaatttatatagctatttaaccggattaaat 5384700  T
Q  120 cgg 122  Q
    |||    
T  5384699 cgg 5384697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 7156259 - 7156160
Alignment:
Q  18 tcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggattaa 117  Q
    |||| ||| |||||||||||||||||| || | ||| | |||| ||||| ||||||||||||| | ||||||||||||||||| ||| ||| ||||||||    
T  7156259 tcatcggttgaaccgcatgactgaaccagatcaacttgaatgattcggtaagataactcggtcttgagattaaatttatatagatatttaagcggattaa 7156160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 16914508 - 16914441
Alignment:
Q  27 gaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaattt 94  Q
    |||||||||||||||| |||| | | ||||||||||| |||||||||||||||  ||| |||||||||    
T  16914508 gaaccgcatgactgaatcggatcaaatcggatgactcagttagataactcggtgtttaaattaaattt 16914441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 37034906 - 37034810
Alignment:
Q  17 gtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggatta 116  Q
    ||||||||||||||||||||||||||||||| |          ||||||||||||||||||||| | |||||||| |||||||| ||| ||| || ||||    
T  37034906 gtcattggtcgaaccgcatgactgaaccggatc---------aactcggttagataactcggtcttgagattaaacttatatagctatttaatcgaatta 37034816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 52585221 - 52585253
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccgga 47  Q
    |||||||||||||||||||||||||||||||||    
T  52585221 gagtcattggtcgaaccgcatgactgaaccgga 52585253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 32364196 - 32364278
Alignment:
Q  17 gtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatata 99  Q
    |||| |||| |||||||||||||||| ||||   |  ||||| |||||||||||| |||||||| | ||||||||||| ||||    
T  32364196 gtcactggttgaaccgcatgactgaatcggattaaaccggataactcggttagatgactcggtcttaagattaaatttttata 32364278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 29025332 - 29025529
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29025332 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 29025431  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataataacccctgtaaaataagataaaaattatccaacaataata 212  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  29025432 taactcggattaactcggattgaatcggtgactcggtcactttataaactaaaataatgacccctgtaaaataagataaaaactatccaacaataata 29025529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 30465116 - 30464969
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30465116 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaaccggat 30465017  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||||||          |||||||||||||||||||||||||||||||||||||||||    
T  30465016 taactcg----------gattgaatcggtgactcggtcactttagaaactaaaataat 30464969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 44832476 - 44832647
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44832476 gagtcattggtcgaaccgcatgactgaaccggaaccactcggataactcggttagataactcggtccttagattaaatttatatagttatttaaccggat 44832575  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataataacccctgtaaaataagataaaaa 196  Q
    ||||||||||||          ||| ||||| |||| ||||||| ||||||||||||| ||||| |||||||||||||||||    
T  44832576 taactcggatta----------aattggtgagtcggccactttaaaaactaaaataatgaccccagtaaaataagataaaaa 44832647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 23241889 - 23241745
Alignment:
Q  18 tcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggattaa 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  23241889 tcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagaataaatttatatagttatttaaccggattaa 23241790  T
Q  118 ctcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    ||||          |||||||||||||||||||||||||||||||||||||||||    
T  23241789 ctcg----------gattgaatcggtgactcggtcactttagaaactaaaataat 23241745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 39850768 - 39850915
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||         
T  39850768 gagtcattggtcgaaccgcatgattgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaac----- 39850862  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
         ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39850863 -----cggattaactcggattgaatcggtgactcagtcactttagaaactaaaataat 39850915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 10259237 - 10259097
Alignment:
Q  22 tggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggattaactcg 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  10259237 tggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataattcggtccttagattaaatttatatagttatttaaccggattaactcg 10259138  T
Q  122 gattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
              |||||||||||||||||||||||||||||||||||||||||    
T  10259137 ----------gattgaatcggtgactcggtcactttagaaactaaaataat 10259097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 2849295 - 2849148
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||          
T  2849295 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaa------ 2849202  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
        | ||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  2849201 ----ttggattaactcttattgaatcggtgactcggtcactttagaaactaaaataat 2849148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 33634956 - 33635103
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||  ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||         
T  33634956 gagtcattggtcgaaccgcatgatagaatcggaacaactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaac----- 33635050  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
         | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33635051 -----cagattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 33635103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 26725617 - 26725763
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  26725617 gagttattggtcgaaccgcatgactgaatcagaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaaccgga- 26725715  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
             |||||||||||||||||||||| || |||||||||||||||||||||||    
T  26725716 ---------ttaactcggattgaatcggtgattc-gtcactttagaaactaaaataat 26725763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 11335692 - 11335545
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||  ||||||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||||||||  |||| |||||||||    
T  11335692 gagtcattgaacgaaccgcatgactgaatcagaatcactcggatgattcggttagataactcggtccttagattaaatttatattcttatttaaccggat 11335593  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||||||          |||||||||||||||||||||||||||||||||||||||||    
T  11335592 taactcg----------gattgaatcggtgactcggtcactttagaaactaaaataat 11335545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 11676261 - 11676143
Alignment:
Q  44 cggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggattaactcggattaactcggattgaatcggt 143  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||          ||||||||||||    
T  11676261 cggaaccactcggatgactcgtttagataactcggtccttaaattaaatttatatagttatttaaccggattaactcg----------gattgaatcggt 11676172  T
Q  144 gactcggtcactttagaaactaaaataat 172  Q
    |||||||||||||||||||||||||||||    
T  11676171 gactcggtcactttagaaactaaaataat 11676143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 33987249 - 33987149
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||    
T  33987249 gagtcattggtcgaaccgcatgactgaatcgaaaccactcgaatgactcggttagataactcggttcttagattaaatttatatagttatttaatcggat 33987150  T
Q  115 t 115  Q
    |    
T  33987149 t 33987149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 52404380 - 52404273
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||||||||| | ||||||| | |||||||||||||||||||||||||||||| | ||||||||||||||||| ||| ||| || ||    
T  52404380 gagtcattggtcgaaccgcatgattaaaccggatcaactcggatgactcggttagataactcggtcttgagattaaatttatatagctatttaatcgtat 52404281  T
Q  115 taactcgg 122  Q
    ||| ||||    
T  52404280 taaatcgg 52404273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 37599903 - 37599769
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||| ||             ||||||||||||||||||||||||| |||||||||    
T  37599903 gagtcattggtcgaaccgcatgactgaatcgtaaccactcggatgactcagt-------------ccttagattaaatttatatagttatttaaccggat 37599817  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||||||||||          |||||||||||||||||||||||||||||||||||||    
T  37599816 taactcggatt----------gaatcggtgactcggtcactttagaaactaaaataat 37599769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 45158533 - 45158643
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||||||||||||||||||| | |||| |||| |||||||||||||||||||| | ||||||||||||||||  ||| ||| |||||    
T  45158533 gagtcattggtcgaaccgcatgactgaaccggatcaactcagatggctcggttagataactcggtcttgagattaaatttatataactatttaatcggat 45158632  T
Q  115 taactcggatt 125  Q
     || |||||||    
T  45158633 aaaatcggatt 45158643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 55258114 - 55258017
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||             ||||||||||||||||||||||||| |||||||||    
T  55258114 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggt-------------ccttagattaaatttatatagttatttaaccggat 55258028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 5123827 - 5123927
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||| ||||||||||| ||||| ||| | ||||||||||||||||||||||||||| || | ||||||||||||||||| ||| |||| ||||    
T  5123827 gagtcattggttgaaccgcatgaatgaactggatcaactcggatgactcggttagataactcgctcttgagattaaatttatataggtatttaactggat 5123926  T
Q  115 t 115  Q
    |    
T  5123927 t 5123927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 45096365 - 45096464
Alignment:
Q  18 tcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggattaa 117  Q
    |||| ||| ||||| ||||||| ||||||| | ||||||||||||| || |||||| |||||| | ||||||||||||||||| ||| ||| ||| ||||    
T  45096365 tcatcggttgaaccacatgacttaaccggatcaactcggatgactcagtaagataaatcggtcttgagattaaatttatatagatatttaagcgggttaa 45096464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 27002631 - 27002686
Alignment:
Q  60 actcggttagataactcggtccttagattaaatttatatagttatataaccggatt 115  Q
    |||||||| |||||||||||| | ||||||||||||||||| ||| ||||||||||    
T  27002631 actcggttggataactcggtcttgagattaaatttatatagctatttaaccggatt 27002686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 5123923 - 5124002
Alignment:
Q  131 ggattgaatcggtgactcggtcactttagaaactaaaataataacccctgtaaaataagataaaaattatccaacaataata 212  Q
    |||||||||| |||||| |||||||||| ||||||||||||| |  |||||||||||  | || || |||||||||||||||    
T  5123923 ggattgaatcagtgacttggtcactttaaaaactaaaataatgatacctgtaaaata--aaaataaatatccaacaataata 5124002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 41462286 - 41462234
Alignment:
Q  123 attaactcggattgaatcggtgactcggtcactttagaaactaaaataataac 175  Q
    ||||| |||||||||| ||||||||||||||||  | ||||||||||||||||    
T  41462286 attaaatcggattgaaccggtgactcggtcactccaaaaactaaaataataac 41462234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 50007317 - 50007245
Alignment:
Q  22 tggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaattt 94  Q
    |||| |||||||||||||||| |||| | |  ||||||||||||| ||||||||||||  ||| |||||||||    
T  50007317 tggttgaaccgcatgactgaatcggatcaaaccggatgactcggtaagataactcggtgtttaaattaaattt 50007245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 51229533 - 51229476
Alignment:
Q  22 tggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggt 79  Q
    ||||||||||||||||||||| ||||   | |||||||||||||||| || |||||||    
T  51229533 tggtcgaaccgcatgactgaatcggattgaatcggatgactcggttatatgactcggt 51229476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 11018777 - 11018809
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccgga 47  Q
    ||||||||||||||||||||| |||||||||||    
T  11018777 gagtcattggtcgaaccgcataactgaaccgga 11018809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 11575069 - 11575177
Alignment:
Q  17 gtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggatta 116  Q
    ||||||||| ||||||| |||||||| |||| | |  ||||||||||||| | |||||  |||  ||||||||||||| ||||| ||| |||   |||||    
T  11575069 gtcattggttgaaccgcgtgactgaatcggatcaaaccggatgactcggtaaaataaccaggtgtttagattaaatttgtataggtatttaatgagatta 11575168  T
Q  117 actcggatt 125  Q
    | |||||||    
T  11575169 aatcggatt 11575177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 42907842 - 42907874
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccgga 47  Q
    ||||||||||| |||||||||||||||||||||    
T  42907842 gagtcattggttgaaccgcatgactgaaccgga 42907874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 44201210 - 44201282
Alignment:
Q  53 tcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggattaactcggatt 125  Q
    ||||||||||||||||||||||  |||  ||||||||||||| ||||| ||| ||| |  ||||| |||||||    
T  44201210 tcggatgactcggttagataacctggtgtttagattaaatttgtataggtatttaatcaaattaaatcggatt 44201282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 51537217 - 51537117
Alignment:
Q  17 gtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggatta 116  Q
    |||| |||| |||||||||| ||||| ||||   |  ||||| |||||||||||| |||||||| | ||||||||||| ||||  ||| ||||| |||||    
T  51537217 gtcactggttgaaccgcatgtctgaatcggattaaaccggataactcggttagatgactcggtcttaagattaaatttttataactatttaaccagatta 51537118  T
Q  117 a 117  Q
    |    
T  51537117 a 51537117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 14635418 - 14635615
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14635418 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 14635517  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataataacccctgtaaaataagataaaaattatccaacaataata 212  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| |||||||||||||||    
T  14635518 taactcggattaactcggatttaatcggtgactcggtcactttagaaactaaaataatgacccctataaaataagaaaaaaactatccaacaataata 14635615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 3752521 - 3752714
Alignment:
Q  9 agcagagagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataa 108  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3752521 agcagtgagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataa 3752620  T
Q  109 ccggattaactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataataacccctgtaaaataagataaaaattatccaacaat 208  Q
    |          |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| |||||||||||    
T  3752621 c----------cggattaactcggatttaatcggtgactcggtcactttagaaactaaaataatgacccctataaaataagaaaaaaactatccaacaat 3752710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 27194800 - 27194615
Alignment:
Q  17 gtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggatta 116  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27194800 gtcattggtcgaaccacatgactgaaccggaaccactcagatgactcggttagataactcggtccttagattaaatttatatagttatttaaccggatta 27194701  T
Q  117 actcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataataacccctgtaaaataagataaaaattatccaacaataata 212  Q
    |||||          ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  27194700 actcg----------gattgaatcggcgactcggtcactttagaaactaaaataataacccctataaaataagataaaaactatccaacaataata 27194615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 40143977 - 40144124
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||         
T  40143977 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaac----- 40144071  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40144072 -----cggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 40144124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 36745897 - 36745750
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36745897 gagtcattggtcgaaccgcatgactgaatcggaatcactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaaccggat 36745798  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||||||          |||||||||||||||||||||||||||||||||||||||||    
T  36745797 taactcg----------gattgaatcggtgactcggtcactttagaaactaaaataat 36745750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 26166240 - 26166069
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||    
T  26166240 gagtcattggtcgaaccgcatgactgaaccagaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttattaaatcggat 26166141  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataataacccctgtaaaataagataaaaa 196  Q
    ||||||| | |||     |||||     |||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  26166140 taactcgtactaa-----attga-----tgactcggtcactttaaaaactaaaataatgacccctgtaaaataagataaaaa 26166069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 8761124 - 8761017
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8761124 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaaccggat 8761025  T
Q  115 taactcgg 122  Q
    ||||||||    
T  8761024 taactcgg 8761017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 38040696 - 38040843
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||| ||||         
T  38040696 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcagtcagataactcgatccttagattaaatttatatagttatttaac----- 38040790  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
         | ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38040791 -----cagattaactcggattgaatcggtgactcggtcactttataaactaaaataat 38040843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 35758108 - 35758245
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| |||||||          |||||||||||||||||||||||||||||||||||||||||||| ||||         
T  35758108 gagtcattggtcgaaccgcatgactgaatcggaacc----------ctcggttagataactcggtccttagattaaatttatatagttatttaac----- 35758192  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
         ||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  35758193 -----cggattaactcggattgaatcagtgacacggtcactttagaaactaaaataat 35758245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 29293381 - 29293481
Alignment:
Q  17 gtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggatta 116  Q
    ||||||||||||||||||||||| ||| ||| | |||||||||||||| || |||||||||||| | ||||||||||||||||| ||| |||||||||||    
T  29293381 gtcattggtcgaaccgcatgactaaactggatcaactcggatgactcgcttggataactcggtcttgagattaaatttatatagatatttaaccggatta 29293480  T
Q  117 a 117  Q
    |    
T  29293481 a 29293481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 6514413 - 6514364
Alignment:
Q  123 attaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6514413 attaactcggattgaatcggtgactcggtcactttagaaactaaaataat 6514364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 39051962 - 39051855
Alignment:
Q  18 tcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggattaa 117  Q
    |||||| ||||||||||||||||||||  | | ||| | || ||||||||||||| ||||||| | ||||||||||||||||| ||| |||| |||||||    
T  39051962 tcattgttcgaaccgcatgactgaaccatatcaacttgaataactcggttagatatctcggtcttaagattaaatttatatagctatttaactggattaa 39051863  T
Q  118 ctcggatt 125  Q
     |||||||    
T  39051862 atcggatt 39051855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 389692 - 389633
Alignment:
Q  66 ttagataactcggtccttagattaaatttatatagttatataaccggattaactcggatt 125  Q
    |||||||||| |||| | |||||||||||||| |||||| |||||||||||| |||||||    
T  389692 ttagataacttggtcttgagattaaatttatacagttatttaaccggattaaatcggatt 389633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 6273201 - 6273311
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||| ||||||||||| |||||||||||||| | |  || || |||||||||||| |||||| | | ||||||||||| ||||  |||  |||| |||    
T  6273201 gagtcaatggtcgaaccgtatgactgaaccggatcaaaccgaataactcggttagatgactcggccttaagattaaatttttatatgtattgaaccagat 6273300  T
Q  115 taactcggatt 125  Q
    ||| |||||||    
T  6273301 taaatcggatt 6273311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 8761020 - 8760987
Alignment:
Q  139 tcggtgactcggtcactttagaaactaaaataat 172  Q
    ||||||||||||||||||||||||||||||||||    
T  8761020 tcggtgactcggtcactttagaaactaaaataat 8760987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 33498330 - 33498278
Alignment:
Q  123 attaactcggattgaatcggtgactcggtcactttagaaactaaaataataac 175  Q
    ||||| || ||||||| ||||||||||||||||  | ||||||||||||||||    
T  33498330 attaaatcagattgaaccggtgactcggtcactccaaaaactaaaataataac 33498278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 21289623 - 21289810
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  21289623 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataac----- 21289717  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataataacccctgtaaaataagataaaaattatccaacaataata 212  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  21289718 -----cggattaactcggattgaatcggtgactcggtcactttagaaactaaaataatgacccctgtaaaataaaataaaaattatccaacaataata 21289810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 24068227 - 24068080
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  24068227 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtgcttagattaaatttatatagttatttaaccggat 24068128  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||||||          |||||||| ||||||||||||||||||||||||||||||||    
T  24068127 taactcg----------gattgaattggtgactcggtcactttagaaactaaaataat 24068080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 22351282 - 22351135
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||     
T  22351282 gagtcattggtcgaaccgcatgacttaatcagaaccactcggatgactcggttagataactcagtccttagattaaatttatatagttatttaaccggaa 22351183  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||||||          |||||||||||||||||||||||||||||||||||||||||    
T  22351182 taactcg----------gattgaatcggtgactcggtcactttagaaactaaaataat 22351135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 30269666 - 30269766
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30269666 gagtcgttggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaaccggat 30269765  T
Q  115 t 115  Q
    |    
T  30269766 t 30269766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 13630274 - 13630375
Alignment:
Q  21 ttggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggattaactc 120  Q
    |||||||||| |||||||||| ||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||    
T  13630274 ttggtcgaactgcatgactgatccggaactactcgaatgactcggttagataactcggtctttagattaaatttatataattatttaaccggattaactc 13630373  T
Q  121 gg 122  Q
    ||    
T  13630374 gg 13630375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 31513401 - 31513219
Alignment:
Q  17 gtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggatta 116  Q
    ||||||||||||||||||||||| ||||||| | ||||||||||||||||| |||| ||||||| | |||||||||||| |||| ||| |||||          
T  31513401 gtcattggtcgaaccgcatgactaaaccggatcaactcggatgactcggttggatatctcggtcttgagattaaatttaaatagctatttaacc------ 31513308  T
Q  117 actcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataataacccctgtaaaataagataaaaattatccaacaataata 212  Q
         |||||| |||||||||||||||||||||||||||||| | || |||||||| || | |||||||||  | || || |||||||||||||||    
T  31513307 -----gattaaatcggattgaatcggtgactcggtcactttaaacacgaaaataatgacacatgtaaaata--aaaataaatatccaacaataata 31513219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 8464357 - 8464450
Alignment:
Q  18 tcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccg 111  Q
    ||||||||||||||||||||||||||| || | | ||||||||||| |||||||||||||||| | ||||||||||||||||| ||| ||||||    
T  8464357 tcattggtcgaaccgcatgactgaaccagatcaattcggatgactctgttagataactcggtcttgagattaaatttatatagctatttaaccg 8464450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 30269761 - 30269803
Alignment:
Q  130 cggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30269761 cggattgaatcggtgactcggtcactttagaaactaaaataat 30269803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 31504751 - 31504593
Alignment:
Q  41 aaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggattaactcggattaactcggattgaatc 140  Q
    ||||||| | |||||||| |||||||| |||| ||||||| | |||||||||||| |||| ||| ||||||           ||||| ||||||||||||    
T  31504751 aaccggatcaactcggattactcggttggatatctcggtcttgagattaaatttaaatagctatttaaccg-----------attaaatcggattgaatc 31504663  T
Q  141 ggtgactcggtcactttagaaactaaaataataacccctgtaaaataagataaaaattatccaacaataata 212  Q
    |||||||||||||||||| | || |||||||| || | |||||||||  | || || |||||||||||||||    
T  31504662 ggtgactcggtcactttaaacacgaaaataatgacacatgtaaaata--aaaataaatatccaacaataata 31504593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 13630372 - 13630429
Alignment:
Q  139 tcggtgactcggtcactttagaaactaaaataataacccctgtaaaataagataaaaa 196  Q
    |||||||||| ||||||||| ||||||||||||| ||| | |||||||||||||||||    
T  13630372 tcggtgactcagtcactttaaaaactaaaataatgaccacggtaaaataagataaaaa 13630429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 21528869 - 21528807
Alignment:
Q  17 gtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggt 79  Q
    |||| ||||||||||||||||||||| ||||   | |||||||||||||||| || |||||||    
T  21528869 gtcactggtcgaaccgcatgactgaatcggattgaatcggatgactcggttatatgactcggt 21528807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 7648095 - 7648282
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  7648095 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataac----- 7648189  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataataacccctgtaaaataagataaaaattatccaacaataata 212  Q
         |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  7648190 -----cggattaactcggattgaattggtgactcggtcactttagaaactaaaataatgacccctgtaaaataagataaaaactatccaacaataata 7648282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 55497526 - 55497672
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||         
T  55497526 gagtcattgatcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaac----- 55497620  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataa 171  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55497621 -----cggattaactcggattgaatcggtgactcggtcactttagaaactaaaataa 55497672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 23611567 - 23611420
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  23611567 gagtcattggtcgaaccgcatgactgaatcgaaaccactcggataactcggttagataactcggtccttagattaaatttatatagttatttaactggat 23611468  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||||||          |||||||||||||||||||||||||||||||||||||||||    
T  23611467 taactcg----------gattgaatcggtgactcggtcactttagaaactaaaataat 23611420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 11792460 - 11792557
Alignment:
Q  18 tcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggatt 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  11792460 tcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagaataaatttatatagttatttaaccggatt 11792557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 1936537 - 1936427
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| | ||||||||||||||||| ||| |||||||||    
T  1936537 gagtcattggtcgaaccgcatgactgaaccggatcaactcggatggctcggttagataactcggtcttgagattaaatttatatagctatttaaccggat 1936438  T
Q  115 taactcggatt 125  Q
    ||| |||||||    
T  1936437 taaatcggatt 1936427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 25232701 - 25232594
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| | ||||||||||||||||| ||| ||||| |||    
T  25232701 gagtcattggtcgaaccgcatgactgaaccggatcaactcggatggctcggttagataactcggtcttgagattaaatttatatagatatttaaccagat 25232602  T
Q  115 taactcgg 122  Q
    ||| ||||    
T  25232601 taaatcgg 25232594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 12704686 - 12704576
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||| ||||||||||| ||||||||||| | |||||||||||||||||||||||||||||| | ||||||||||||||||  ||| |||||||||    
T  12704686 gagtcattgatcgaaccgcattactgaaccggatcaactcggatgactcggttagataactcggtcttgagattaaatttatataactatttaaccggat 12704587  T
Q  115 taactcggatt 125  Q
    ||| |||||||    
T  12704586 taaatcggatt 12704576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 9374878 - 9374949
Alignment:
Q  141 ggtgactcggtcactttagaaactaaaataataacccctgtaaaataagataaaaattatccaacaataata 212  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||    
T  9374878 ggtgactcggtcactttagaaactaaaataatgacccttgtaaaataagataaaaactatccaacaataata 9374949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 55675493 - 55675595
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||| |||| |||||||   ||||| ||| |||||||||||||||||||| | ||||||||||||||||| ||| |||| ||||    
T  55675493 gagtcattggtcgaaccgcaagactaaaccggattaactcgaatggctcggttagataactcggtcttgagattaaatttatatagctatttaactggat 55675592  T
Q  115 taa 117  Q
    |||    
T  55675593 taa 55675595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 8261063 - 8260981
Alignment:
Q  17 gtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatata 99  Q
    |||||||||| |||| ||||||| ||||||| | |||||||||||||| ||| ||||||||||| | ||||||||||||||||    
T  8261063 gtcattggtcaaaccacatgactaaaccggatcaactcggatgactcgattacataactcggtcttgagattaaatttatata 8260981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 8274480 - 8274398
Alignment:
Q  17 gtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatata 99  Q
    |||||||||| |||| ||||||| ||||||| | |||||||||||||| ||| ||||||||||| | ||||||||||||||||    
T  8274480 gtcattggtcaaaccacatgactaaaccggatcaactcggatgactcgattacataactcggtcttgagattaaatttatata 8274398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 8260971 - 8260890
Alignment:
Q  129 tcggattgaatcggtgactcggtcactttagaaactaaaataataacccctgtaaaataagataaaaattatccaacaataata 212  Q
    |||||||||||||||||||||||||||||| |||| |||||||| || | |||||||||  | || || |||||||||||||||    
T  8260971 tcggattgaatcggtgactcggtcactttaaaaacgaaaataatgacacatgtaaaata--aaaataaatatccaacaataata 8260890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 8274388 - 8274307
Alignment:
Q  129 tcggattgaatcggtgactcggtcactttagaaactaaaataataacccctgtaaaataagataaaaattatccaacaataata 212  Q
    |||||||||||||||||||||||||||||| |||| |||||||| || | |||||||||  | || || |||||||||||||||    
T  8274388 tcggattgaatcggtgactcggtcactttaaaaacgaaaataatgacacatgtaaaata--aaaataaatatccaacaataata 8274307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 28359702 - 28359603
Alignment:
Q  18 tcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggattaa 117  Q
    |||||| | |||||||||||||||| | || | |||||||||||||||||| ||| |||||||   ||||| ||||||||||| ||| ||||| ||||||    
T  28359702 tcattgattgaaccgcatgactgaatcagatcaactcggatgactcggttaaatatctcggtctaaagatttaatttatataggtatttaaccagattaa 28359603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 11792552 - 11792594
Alignment:
Q  130 cggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  11792552 cggattgaatcggtgagtcggtcactttagaaactaaaataat 11792594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 44352162 - 44352272
Alignment:
Q  17 gtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggatta 116  Q
    |||| |||| |||||||||||||||| | || | |  ||||||||||||| ||||||| ||||  ||||||||||||| ||||| ||| ||| | |||||    
T  44352162 gtcactggttgaaccgcatgactgaatcagatcaaaccggatgactcggtaagataacccggtgtttagattaaatttgtataggtatttaatcagatta 44352261  T
Q  117 actcggattaa 127  Q
    | |||||||||    
T  44352262 aatcggattaa 44352272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 24776193 - 24776120
Alignment:
Q  18 tcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaa 91  Q
    |||||||| |||| ||||| ||||| |||| | | |||||||||||||||||||||| ||||  ||||||||||    
T  24776193 tcattggttgaactgcatggctgaatcggatcaaatcggatgactcggttagataacacggtgtttagattaaa 24776120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 29695423 - 29695350
Alignment:
Q  54 cggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggattaactcggattaa 127  Q
    ||||||||||||| ||||||| ||||  ||||||||||||| ||||| ||| ||| | |||||| | |||||||    
T  29695423 cggatgactcggtaagataacccggtgtttagattaaatttgtataggtatttaatcagattaaattggattaa 29695350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 8132864 - 8132896
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccgga 47  Q
    ||||||||||| |||||||||||||||||||||    
T  8132864 gagtcattggttgaaccgcatgactgaaccgga 8132896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 44605962 - 44605775
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  44605962 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggtttgataactcggtccttagattaaatttatatagttatttaaccggat 44605863  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataataacccctgtaaaataagataaaaattatccaacaataata 212  Q
    |||||||          ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||    
T  44605862 taactcg----------gattgaatcggcgactcggtcactttagaaactaaaataatgacccctgtaaaataagataaaaactattcaacaataata 44605775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 36099718 - 36099571
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36099718 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaaccggat 36099619  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||||||          |||||||||||||||||||||||||||||||||||||||||    
T  36099618 taactcg----------gattgaatcggtgactcggtcactttagaaactaaaataat 36099571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 29983308 - 29983455
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||         
T  29983308 gagtcattggtcgaaccgcatgactgaatcggaaccactcagatgactcggttagataactcggtccttagattaaatttatatagttatttaac----- 29983402  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29983403 -----cggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 29983455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 36858206 - 36858353
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||         
T  36858206 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatacagttatttaac----- 36858300  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36858301 -----cggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 36858353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 11734272 - 11734125
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11734272 gagtcattggtcgaaccgcatgactgaatcggaaccactcggataactcggttagataactcggtccttagattaaatttatatagttatttaaccggat 11734173  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||||||          |||||||||||||||||||||| |||| |||||||||||||    
T  11734172 taactcg----------gattgaatcggtgactcggtcattttaaaaactaaaataat 11734125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 47423518 - 47423628
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47423518 gagtcattggtcgaaccgcatgactgaatcggaaccactcagatgattcggttagataactcggtccttagattaaatttatatagttatttaaccggat 47423617  T
Q  115 taactcggatt 125  Q
    |||||||||||    
T  47423618 taactcggatt 47423628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 16217035 - 16216925
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||||    
T  16217035 gagtcattggtcgaaccacatgactgaaccggatcaactcggatgactcggttagataactcagtcttgagattaaatttatatagttatttaaccggat 16216936  T
Q  115 taactcggatt 125  Q
    ||| |||||||    
T  16216935 taaatcggatt 16216925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 10198380 - 10198490
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| || | ||||||||||||||||| ||| |||| ||||    
T  10198380 gagtcattggtcgaaccgcatgactgaaccggatcaactcggatgactcggttagataactcgatcttgagattaaatttatatagctatttaactggat 10198479  T
Q  115 taactcggatt 125  Q
    ||| |||||||    
T  10198480 taaatcggatt 10198490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 33628287 - 33628189
Alignment:
Q  17 gtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggatt 115  Q
    ||||||||||||||||||||||| ||||||| | ||||||||||||||||| |||||||||||| | ||||||||||||||||| ||| ||||||||||    
T  33628287 gtcattggtcgaaccgcatgactaaaccggatcaactcggatgactcggttggataactcggtcttgagattaaatttatatagctatttaaccggatt 33628189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 14801974 - 14801875
Alignment:
Q  63 cggttagataactcggtccttagattaaatttatatagttatataaccggattaactcggattaactcggattgaatcggtgactcggtcactttagaaa 162  Q
    |||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||          |||||||||||||||||||||||||||    
T  14801974 cggttagataactcggtccttagattaaatgtatatagttatttatccggattaactcggatt----------gaatcggtgactcggtcactttagaaa 14801885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 15248966 - 15248867
Alignment:
Q  63 cggttagataactcggtccttagattaaatttatatagttatataaccggattaactcggattaactcggattgaatcggtgactcggtcactttagaaa 162  Q
    |||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||          |||||||||||||||||||||||||||    
T  15248966 cggttagataactcggtccttagattaaatgtatatagttatttatccggattaactcggatt----------gaatcggtgactcggtcactttagaaa 15248877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 24096750 - 24096640
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||| ||||||| || | |||||| |||||||||||||||||||| || | ||||||||||||||||  ||| |||||||||    
T  24096750 gagtcattggtcgaaccgcatgtctgaaccagatcaactcgggtgactcggttagataactcgatcttgagattaaatttatataactatttaaccggat 24096651  T
Q  115 taactcggatt 125  Q
    ||| |||||||    
T  24096650 taaatcggatt 24096640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 20131381 - 20131273
Alignment:
Q  17 gtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggatta 116  Q
    ||||||| |||| |||||||||| ||||||| | ||||||||||||| ||||||||| |||||| | ||||||||||||||||| ||| |||||||||||    
T  20131381 gtcattgatcgatccgcatgactaaaccggatcaactcggatgactcagttagataattcggtcttaagattaaatttatatagctatttaaccggatta 20131282  T
Q  117 actcggatt 125  Q
    | |||||||    
T  20131281 aatcggatt 20131273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 16198737 - 16198629
Alignment:
Q  17 gtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggatta 116  Q
    |||| |||| |||||||||| ||||| |||| | | ||||||||||||||||||||| |||||  |||||||||||||  |||||||| ||| |  ||||    
T  16198737 gtcactggttgaaccgcatggctgaaacggatcaaatcggatgactcggttagataattcggtgtttagattaaatttgcatagttatttaatcatatta 16198638  T
Q  117 actcggatt 125  Q
    | |||||||    
T  16198637 aatcggatt 16198629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 47423613 - 47423667
Alignment:
Q  120 cggattaactcggattgaatcggtgact--cggtcactttagaaactaaaataat 172  Q
    ||||||||||||||||||||||||||||  || ||||||||||||||||||||||    
T  47423613 cggattaactcggattgaatcggtgactcgcgatcactttagaaactaaaataat 47423667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 46170714 - 46170798
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatata 99  Q
    |||||| |||||||||||||||| ||||||||| | |  || || |||||||||||| |||||| | | ||||||||||| ||||    
T  46170714 gagtcaatggtcgaaccgcatgaatgaaccggatcaaaccgaataactcggttagatgactcggccttaagattaaatttttata 46170798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 9822592 - 9822624
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccgga 47  Q
    ||||||||||||||||||||| |||||||||||    
T  9822592 gagtcattggtcgaaccgcataactgaaccgga 9822624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 10724517 - 10724549
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccgga 47  Q
    ||||||||||||||||||||| |||||||||||    
T  10724517 gagtcattggtcgaaccgcataactgaaccgga 10724549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 42063535 - 42063694
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||         
T  42063535 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaac----- 42063629  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataataacccctgtaaa 184  Q
         ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||    
T  42063630 -----cggattaactcggattgaatcggtgactcggtcactttataaactaaaataatgacctctgtaaa 42063694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 36658580 - 36658727
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||         
T  36658580 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaac----- 36658674  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36658675 -----cggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 36658727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 40485583 - 40485436
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40485583 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaaccggat 40485484  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||||||          |||||||||||||||||||||||||||||||||||||||||    
T  40485483 taactcg----------gattgaatcggtgactcggtcactttagaaactaaaataat 40485436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 41726388 - 41726241
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41726388 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaaccggat 41726289  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||||||          |||||||||||||||||||||||||||||||||||||||||    
T  41726288 taactcg----------gattgaatcggtgactcggtcactttagaaactaaaataat 41726241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 5970033 - 5969886
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5970033 gagtcattggttgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 5969934  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||||||          |||||||||||||| ||||||||||||||||||||||||||    
T  5969933 taactcg----------gattgaatcggtgattcggtcactttagaaactaaaataat 5969886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 3655930 - 3656077
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||         
T  3655930 gagtcattggtcgaaccgcatgactaaatcggaaccactcggatgactcggttagataactcggttcttagattaaatttatatagttatttaac----- 3656024  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3656025 -----cggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 3656077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 19726743 - 19726596
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19726743 gagtcattggtcgaaccgcatgactgaatcggaaccactcagatgactcggttagataactcggtccttagattaaatttatatagttatttaaccggat 19726644  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||||||          ||||||||| |||||||||||||||||||||||||||||||    
T  19726643 taactcg----------gattgaatcagtgactcggtcactttagaaactaaaataat 19726596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 13487180 - 13487033
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  13487180 gagtcattggtcgaaccgcatgactgaatcggaaccacgcggatgactcggttagataactcggtccttagattatatttatatagttatttaaccggat 13487081  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||||||          |||||||||||||| ||||||||||||||||||||||||||    
T  13487080 taactcg----------gattgaatcggtgattcggtcactttagaaactaaaataat 13487033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 14910168 - 14910315
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| ||||         
T  14910168 gagtcattggtcgaaccgcatgactaaatcggaaccactcgaatgactcggttagataactcgatccttagattaaatttatattgttatttaac----- 14910262  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14910263 -----cggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 14910315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 30360528 - 30360675
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||         
T  30360528 gagtcattgttcgaaccgcatgactgaatcggaaccactcggatgacttggttagataactcggtccttagattaaatttatatagttatttaac----- 30360622  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
         |||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  30360623 -----cggattaactcggattgaatcggtgacttgatcactttagaaactaaaataat 30360675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 31008565 - 31008418
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  31008565 gagtcattggtcgaaccgcatgattgaatcggaaccactcggatgactcggttagataactcagtccttagattaaatttatatagttatttaaccggat 31008466  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||          ||||  |||||||||||||||||||||||||||||||||||||||    
T  31008465 taa----------ctcgtgttgaatcggtgactcggtcactttagaaactaaaataat 31008418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 27679289 - 27679187
Alignment:
Q  20 attggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggattaact 119  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  27679289 attggtcgaatcgcatgactgaatcggaaccactcggatgactcggttagataactcgatccttagattaaatttatatagttatttaaccggattaact 27679190  T
Q  120 cgg 122  Q
    |||    
T  27679189 cgg 27679187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 39375187 - 39375297
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||||||||||||| ||| |||||||||    
T  39375187 gagtcattggtcgaaccgcatgactgaaccggatcaactcggatgactcggttagataactcggtcttgagattaaatttatatagctatttaaccggat 39375286  T
Q  115 taactcggatt 125  Q
    ||| |||||||    
T  39375287 taaatcggatt 39375297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 18656662 - 18656555
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||||||||||||| ||| |||||||||    
T  18656662 gagtcattggtcgaaccgcatgactgaaccggatcaactcggatgactcggttagataactcggtcgtgagattaaatttatatagctatctaaccggat 18656563  T
Q  115 taactcgg 122  Q
    ||| ||||    
T  18656562 taaatcgg 18656555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 4455385 - 4455278
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||  | |||||||||| |||||| ||| |||||||||    
T  4455385 gagtcattggtcgaaccgcatgactgaaccggatcaactcggatgactcagttagataactcggtattgagattaaattcatatagctatctaaccggat 4455286  T
Q  115 taactcgg 122  Q
    ||| ||||    
T  4455285 taaatcgg 4455278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 44056532 - 44056425
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||| |||||||||||||| | ||||||||||||| |||||||||||||||| | ||||||||||||||||| ||| ||||| |||    
T  44056532 gagtcattggtcgaaccgtatgactgaaccggatcaactcggatgactcagttagataactcggtcttgagattaaatttatatagctatttaaccagat 44056433  T
Q  115 taactcgg 122  Q
    ||| ||||    
T  44056432 taaatcgg 44056425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 39024466 - 39024562
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccg 111  Q
    ||||||||||||||||||||||||||||||||| | | |||||||||| ||||||||||||||||| | ||||||||||||||||| ||| ||||||    
T  39024466 gagtcattggtcgaaccgcatgactgaaccggatcaattcggatgacttggttagataactcggtcttgagattaaatttatatagctatttaaccg 39024562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 36833980 - 36834062
Alignment:
Q  18 tcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatag 100  Q
    |||||| ||||||||||||||||||||||| | ||||| ||||||| ||||||||||||| || | |||||||||||||||||    
T  36833980 tcattgatcgaaccgcatgactgaaccggatcaactcgaatgactcagttagataactcgatcttgagattaaatttatatag 36834062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 12639388 - 12639292
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccg 111  Q
    ||||||||||| ||||||||||||| |||| || | | | |||||||||| |||||||| |||||  | ||||||||||||||||| ||| ||||||    
T  12639388 gagtcattggttgaaccgcatgacttaaccagatcaatttggatgactcgattagataattcggttttgagattaaatttatataggtatttaaccg 12639292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 12639290 - 12639254
Alignment:
Q  133 attgaatcggtgactcggtcactttagaaactaaaat 169  Q
    |||||||||||||||||||||||||| ||||||||||    
T  12639290 attgaatcggtgactcggtcactttaaaaactaaaat 12639254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 1916513 - 1916565
Alignment:
Q  122 gattaactcggattgaatcggtgactcggtcactttagaaactaaaataataa 174  Q
    |||||| ||| |||||| ||||||||||||||||  | |||||||||||||||    
T  1916513 gattaaatcgaattgaaccggtgactcggtcactccaaaaactaaaataataa 1916565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 6545756 - 6545788
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccgga 47  Q
    ||||||||||||||||||||| |||||||||||    
T  6545756 gagtcattggtcgaaccgcataactgaaccgga 6545788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 7153509 - 7153656
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||          
T  7153509 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaa------ 7153602  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7153603 ----tcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 7153656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 37314972 - 37314825
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37314972 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaaccggat 37314873  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||||||          |||||||||||||||||||||||||||||||||||||||||    
T  37314872 taactcg----------gattgaatcggtgactcggtcactttagaaactaaaataat 37314825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 39061959 - 39061812
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39061959 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaaccggat 39061860  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||||||          |||||||||||||||||||||||||||||||||||||||||    
T  39061859 taactcg----------gattgaatcggtgactcggtcactttagaaactaaaataat 39061812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 39678377 - 39678524
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |    
T  39678377 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttat---------t 39678467  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39678468 taact-ggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 39678524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 17513093 - 17513240
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||         
T  17513093 gagtcattggtcgaactgcatgactaaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaac----- 17513187  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17513188 -----cggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 17513240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 29523921 - 29523774
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  29523921 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaatcggat 29523822  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    ||||||     ||     ||||||||||||||||||||||||||||||||||||||||    
T  29523821 taactc-----aa-----attgaatcggtgactcggtcactttagaaactaaaataat 29523774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 23293216 - 23293097
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  23293216 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttacatagttatttaaccggat 23293117  T
Q  115 taactcggattaactcggat 134  Q
    ||||||||||||| ||||||    
T  23293116 taactcggattaaatcggat 23293097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 24128829 - 24128973
Alignment:
Q  18 tcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggattaa 117  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||            
T  24128829 tcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactaggtccttagattaaatttatatagttatttaac-------- 24128920  T
Q  118 ctcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
      ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24128921 --cggattaactcggattgaatcggtgactcggtccctttagaaactaaaataat 24128973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 31900478 - 31900625
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||          
T  31900478 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataacttggtccttagattaaatttatatagttatttaa------ 31900571  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
        ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  31900572 ----tcggattaactcggattgaatcggtgactcgatcactatagaaactaaaataat 31900625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 14885364 - 14885471
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||    
T  14885364 gagtcattagtcgaaccgcatgactgaaccggaaccactcggatgactcggttaaataactcagtccttagattaaatttatatagttatttaaccggat 14885463  T
Q  115 taactcgg 122  Q
    ||||||||    
T  14885464 taactcgg 14885471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 35305326 - 35305216
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||||||||||||| ||| |||||| ||    
T  35305326 gagtcattggtcgaaccgcatgactgaaccggatcaactcggatgactcggttagataactcggtcttgagattaaatttatatagctatctaaccgaat 35305227  T
Q  115 taactcggatt 125  Q
    ||| |||||||    
T  35305226 taaatcggatt 35305216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 3988780 - 3988829
Alignment:
Q  17 gtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggt 66  Q
    ||||||||| ||||||||||||||||||||| | ||||||||||||||||    
T  3988780 gtcattggttgaaccgcatgactgaaccggatcaactcggatgactcggt 3988829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 27905697 - 27905774
Alignment:
Q  17 gtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaattt 94  Q
    ||||| ||| |||||| ||||||||| | || | | |||||||||||||||||||||||||||  |||||||||||||    
T  27905697 gtcatcggttgaaccgtatgactgaatcagatcaaatcggatgactcggttagataactcggtgtttagattaaattt 27905774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 39761851 - 39761779
Alignment:
Q  53 tcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggattaactcggatt 125  Q
    |||||| ||||||||||||||||||| | | |||||| |||||| ||| ||| |||||||||||| |||||||    
T  39761851 tcggataactcggttagataactcggccttgagattatatttatgtagctatttaaccggattaaatcggatt 39761779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 29781586 - 29781636
Alignment:
Q  122 gattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    |||||| |||||||||| ||||||||||||||||  | |||||||||||||    
T  29781586 gattaaatcggattgaaccggtgactcggtcactccaaaaactaaaataat 29781636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 7501459 - 7501516
Alignment:
Q  22 tggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggt 79  Q
    ||||||||||||||||||||| ||||   | |||||||||||||||| || |||||||    
T  7501459 tggtcgaaccgcatgactgaatcggattgaatcggatgactcggttatatgactcggt 7501516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 20907144 - 20907209
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtc 80  Q
    ||||||||||| |||||||||||||| || ||||  | |||||||||||||||  | |||||||||    
T  20907144 gagtcattggtagaaccgcatgactggactggaataaatcggatgactcggttgtacaactcggtc 20907209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 19882012 - 19882044
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccgga 47  Q
    ||||||||||||||||||||| |||||||||||    
T  19882012 gagtcattggtcgaaccgcataactgaaccgga 19882044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 39761794 - 39761758
Alignment:
Q  120 cggattaactcggattgaatcggtgactcggtcactt 156  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  39761794 cggattaaatcggattgaatcggtgactcgatcactt 39761758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 12794 - 12941
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12794 gagtcattggtcgaaccgcatgactgaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaaccggat 12893  T
Q  115 taactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
    ||||| ||||||          ||||||||||||||||||||||||||||||||||||    
T  12894 taacttggatta----------aatcggtgactcggtcactttagaaactaaaataat 12941  T

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Target: scaffold0231 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 11063 - 10944
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11063 gagtcattggtcgaaccgcatgactaaatcggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatttaaccggat 10964  T
Q  115 taactcggattaactcggat 134  Q
    ||||||||||||| ||||||    
T  10963 taactcggattaaatcggat 10944  T

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Target: scaffold0036 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 14 - 172
Target Start/End: Original strand, 51981 - 52129
Alignment:
Q  14 agagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccgga 113  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||| ||||        
T  51981 agagtcattggtcaaaccgcatgactgaaccggaaccactcggatgactcggttagataattcggtccttagattaaatttgtattgatatttaac---- 52076  T
Q  114 ttaactcggattaactcggattgaatcggtgactcggtcactttagaaactaaaataat 172  Q
          |||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  52077 ------cggattaactcggattgaatcggtgactcggtcactttagaaaccataataat 52129  T

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Target: scaffold0242 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 17882 - 17782
Alignment:
Q  15 gagtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggat 114  Q
    ||||||||||| |||||||||||||||||| || | |||||||||| ||||||| |||||||||||   ||||| ||||||||||| ||| |||||||||    
T  17882 gagtcattggttgaaccgcatgactgaaccagatcaactcggatgattcggttaaataactcggtctagagattcaatttatataggtatttaaccggat 17783  T
Q  115 t 115  Q
    |    
T  17782 t 17782  T

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Target: scaffold0242; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 17787 - 17729
Alignment:
Q  130 cggattgaatcggtgactcggtcactttagaaactaaaataataacccctgtaaaataa 188  Q
    ||||||||||||||||||||||||||||| |||||| ||| || || ||| ||||||||    
T  17787 cggattgaatcggtgactcggtcactttaaaaactataattatgacacctataaaataa 17729  T

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Target: scaffold0043 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 64420 - 64520
Alignment:
Q  17 gtcattggtcgaaccgcatgactgaaccggaaccactcggatgactcggttagataactcggtccttagattaaatttatatagttatataaccggatta 116  Q
    |||| |||| |||||||||||||||| |||| | |  ||||||||||| | ||||||| ||||  ||| ||||||||| ||||| ||| ||| | |||||    
T  64420 gtcactggttgaaccgcatgactgaatcggatcaaaccggatgactcgataagataacccggtgtttaaattaaatttgtatagatatttaatcagatta 64519  T
Q  117 a 117  Q
    |    
T  64520 a 64520  T

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