View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_8 (Length: 521)
Name: NF3547_low_8
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 4 - 521
Target Start/End: Original strand, 35411196 - 35411713
Alignment:
| Q |
4 |
tcatttttgttcaaacttagcctaatgaaagataactaattggtgtacctgttgtacggacatcccttcaatgtggcctataatgtgttcttctttcaat |
103 |
Q |
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| T |
35411196 |
tcatttttgttcaaacttagcctaatgaaagacaactaattggtgtacctgttgtacggacatcccttcaatgtggcctataatgtgttcttctttcaat |
35411295 |
T |
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| Q |
104 |
gctgactctactgaaccatatatagagggatccagtttgctcacaggtgggaaaacctaatgtgnnnnnnntgtcaaaatgaaagaacagaatgttgcat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35411296 |
gctgactctactgaaccatatatagagggatccagtttgctcactggtgggaaaacctaatgtgaaaaaaatgtcaaaatgaaagaacagaatgttgcat |
35411395 |
T |
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| Q |
204 |
taactataattctcacnnnnnnnnagctgatgaaaagttaagttatgttgcatttcaaaggcttaaaaaactcttacaaatgtacttaaatattatccac |
303 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35411396 |
taactataattctcacttttttttagctgatgaaaagttaagttatgttgcatttcaaaggcttaaaaaactcttacaaatgtacttaaatattatccac |
35411495 |
T |
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| Q |
304 |
caacgaagtcctcacatcgacagcgggattcaaacacaagtctttgtaggatctgagtcgaatccttacaattccatcaacctaagttggcaactataat |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35411496 |
caacgaagtcctcacatcgacagcgggattcaaacacaagtctttgtaggatctgagtcgaatccttacaattccatcaacctaagttggcaactataat |
35411595 |
T |
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| Q |
404 |
actcactactaatgaaaatgtttcatttttatgattacctttagcctttcaatacttaaagggtttatcccagctagcacttgacgtccaaattcatcat |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35411596 |
actcactactaatgaaaatgtttcatttttatgattacctttagcctttcaatacttaaagggtttatcccagctagcacttgacgtccaaattcatcat |
35411695 |
T |
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| Q |
504 |
caagtaagaaatgtgatc |
521 |
Q |
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| T |
35411696 |
caagtaagaaatgtgatc |
35411713 |
T |
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Back To:
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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 349
Target Start/End: Original strand, 26000397 - 26000453
Alignment:
| Q |
293 |
atattatccaccaacgaagtcctcacatcgacagcgggattcaaacacaagtctttg |
349 |
Q |
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| T |
26000397 |
atattatccaccaatgaggcactcacatcggcagcgggattcaaactcaaatctttg |
26000453 |
T |
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