View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3547_low_80 (Length: 239)
Name: NF3547_low_80
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_80 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 12150325 - 12150545
Alignment:
| Q |
19 |
tcctcttcattgtaactttgatcatcatttctctgcaaccaataattgatagtacattttaatagggagaaaaatatgcataaaactttgaagaaacata |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12150325 |
tcctcttcattgtaactctgatcatcatttctctgcaaccaataattgatagtacattttaatagggagaaaaatatgcataaaactttgaagaaaaata |
12150424 |
T |
|
| Q |
119 |
atatagaaaaagagattatatagccttattacctctggtgtaaatgtgagagccaccttaatctctccacaatattcttcatccttcacaagattgtaag |
218 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12150425 |
atatagaaaaagagattatattgccttattacctcaggtgtaaaagtgagagcaaccttaatctctccacaatattcttcatccttcacaagattgtaag |
12150524 |
T |
|
| Q |
219 |
cattctctggaaggctaccct |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
12150525 |
cattctctggaaggctaccct |
12150545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 46 - 239
Target Start/End: Original strand, 12143369 - 12143560
Alignment:
| Q |
46 |
tttctctgcaaccaataattgatagtacattttaatagggagaaaaatatgcataaaactttgaagaaacataatatagaaaaagagattatatagcctt |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| ||||||||||||| |||||||| |
|
|
| T |
12143369 |
tttctctgcaaccaataattgatagtacattttaatagggagaaaaatatgcataaaattatgaagaaaaataata--gaaaaagagattaaatagcctt |
12143466 |
T |
|
| Q |
146 |
attacctctggtgtaaatgtgagagccaccttaatctctccacaatattcttcatccttcacaagattgtaagcattctctggaaggctaccct |
239 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||| |||||||||||||| |||||| |||||||| ||||||| ||||||||||| |||||||| |
|
|
| T |
12143467 |
attacctcaggtgtaaaagtgagagcaaccttaacctctccacaatatttttcatctttcacaagtttgtaagaattctctggaacgctaccct |
12143560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University