View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_81 (Length: 238)
Name: NF3547_low_81
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_81 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 43 - 220
Target Start/End: Complemental strand, 50121844 - 50121664
Alignment:
| Q |
43 |
attttttaattaagagagtaaataattggatgaaaggatagtttaaaatttgtttagttgattttgatagtttatggaccatctctat---nnnnnnnnn |
139 |
Q |
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| T |
50121844 |
attttttaattaagagagtaaataattggatgaaaggatagtttaaaatttgtttagttgattttgatagtttatggaccatctctataaaaaaaaaaaa |
50121745 |
T |
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| Q |
140 |
ttatggatcaaattgtcgagagacttaaaatttaaggactaaattatctgtttaaaccaaattttattgtgtggaggtcta |
220 |
Q |
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| T |
50121744 |
ttatggatcaaattgtcgagagacttaaaatttaaggactaaattatctgtttaaaccaaattttattgtgtggaggtcta |
50121664 |
T |
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