View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_84 (Length: 237)
Name: NF3547_low_84
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_84 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 38531611 - 38531817
Alignment:
| Q |
17 |
aagtataatgttttaaagtttaaaaactgttcattcatttaattcagcttgatttaatttacgttcgacattttttgacatgagttaactcacgttagca |
116 |
Q |
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|||| |||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38531611 |
aagtttaatgttttaaagtttgaaaactgttcattaatttaattcagcttgagttaatttacgttcgacatttttcgacatgagttaactcacgttagca |
38531710 |
T |
|
| Q |
117 |
tttttcaatttattttttaaaaaatgtgccacgtaatctttggcgaaatcaaaatctaagaaggtcccaattttgtaaggggttgaaagatatggtgcta |
216 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38531711 |
tttttcaatttattttttaaaaaatgtgccacataatctttggcgaaatcaaaatttgagaaggtcccaattttgtaaggggttgaaagatatggtgcta |
38531810 |
T |
|
| Q |
217 |
aaagtga |
223 |
Q |
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||||||| |
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| T |
38531811 |
aaagtga |
38531817 |
T |
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