View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_87 (Length: 237)
Name: NF3547_low_87
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_87 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 13778930 - 13779149
Alignment:
| Q |
1 |
ctagacagttctaaacatagatttcttatagttactccctccatctcatgtattaagtgtcattgtcatttatagatatacacactttttaagaaaatta |
100 |
Q |
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| T |
13778930 |
ctagacagttctaaacatagatttcttatagttactccctccatctcatgtattaagtgtcattgtcatttatagatatacacactttttaagaaaatta |
13779029 |
T |
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| Q |
101 |
ttctgtgtgctagtaatttctatgataaaatgtgtttcatttactaaataagagtatatcagtnnnnnnntattggtattttaaaatgacaaataatgtg |
200 |
Q |
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| T |
13779030 |
ttctgtgtgctagtaatttctatgataaaatgtgtttcatttactaaataagagtatatcagtaaaaaaatattggtattttaaaatgacaaataatgtg |
13779129 |
T |
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| Q |
201 |
agacaaacaatactctaaat |
220 |
Q |
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||| |||||||||||||||| |
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| T |
13779130 |
agataaacaatactctaaat |
13779149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 38798381 - 38798413
Alignment:
| Q |
114 |
taatttctatgataaaatgtgtttcatttacta |
146 |
Q |
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| T |
38798381 |
taatttctatgataaaatgagtttcatttacta |
38798413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 5399330 - 5399363
Alignment:
| Q |
115 |
aatttctatgataaaatgtgtttcatttactaaa |
148 |
Q |
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| T |
5399330 |
aatttctatgataaaatgtgtttcatttactaaa |
5399363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 45842394 - 45842358
Alignment:
| Q |
172 |
attggtattttaaaatgacaaataatgtgagacaaac |
208 |
Q |
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| T |
45842394 |
attggtattttaaaatgacaaataatatgagacaaac |
45842358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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