View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_90 (Length: 232)
Name: NF3547_low_90
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_90 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 20751503 - 20751284
Alignment:
| Q |
1 |
catttcctttttggaatttaaacagaccattaaagaatatatgaagtaaaatgtttattggattgttgtgatcagagtgacatttttatgactttaattt |
100 |
Q |
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| T |
20751503 |
catttcctttttggaatttaaacagaccattaaagaatatatgaagtaaaatgtttattggattgttgtgatgagaatgacatttttatgactttaattt |
20751404 |
T |
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| Q |
101 |
tataccctcttttcaggatttaaagacgtgaaagatgcttgttgtggacttggtgaggtgaatgctcaannnnnnngtacaccagtttcaagcctttgtg |
200 |
Q |
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| T |
20751403 |
tataccctcttttcaggatttaaagacgtgaaagatgcttgttgtggacttggtgagctgaatgctcaatttttttgtacaccagtttcaagcctttgtg |
20751304 |
T |
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| Q |
201 |
ccaatagacaagaccatatt |
220 |
Q |
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| T |
20751303 |
ccaatagacaagaccatatt |
20751284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 20755898 - 20755790
Alignment:
| Q |
111 |
tttcaggatttaaagacgtgaaagatgcttgttgtggacttggtgaggtgaatgctcaannnnnnngtacaccagtttcaagcctttgtgccaatagaca |
210 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||| | ||||| | |||||||| |
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| T |
20755898 |
tttcaggatttgcagatgtgaaagatgcttgttgtggacttggtgaattgaattctcaatttctgtgtacaccaatttcaatcatttgttctaatagaca |
20755799 |
T |
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| Q |
211 |
agaccatat |
219 |
Q |
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| T |
20755798 |
agaccatat |
20755790 |
T |
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