View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_92 (Length: 227)
Name: NF3547_low_92
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_92 |
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| [»] chr2 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 45313514 - 45313301
Alignment:
| Q |
1 |
cacttttaactgtgcttcagaacttaacttgttaacaatctccctagcttgtggatatattctgaaatagtattaaattaagctaatgttattgttgctt |
100 |
Q |
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| T |
45313514 |
cacttttaactgtgcttcagaacttaacttgttaacaatctccctagcttgtgtatatattctgaaatagtattaaattaagctaatgtt---------- |
45313425 |
T |
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| Q |
101 |
gtttatgtctctatcatgtctaacttagatattccttccttgtttatcttctaatgttatgtttatcacgtctaataatggcattagagtaaatcatcct |
200 |
Q |
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| T |
45313424 |
---tatgtctctatcatgtctaacttagatattccttctttgtttatcttctaattttatgtttatcacgtctaataatggcattagagtaaatcatcct |
45313328 |
T |
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| Q |
201 |
taaagcacttaaatatttcttttgttt |
227 |
Q |
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| T |
45313327 |
taaagcacttaaatatttcttttgttt |
45313301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 45310405 - 45310338
Alignment:
| Q |
153 |
aatgttatgtttatcacgtctaataatggcattagagtaaatcatccttaaagcacttaaatatttctt |
221 |
Q |
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| T |
45310405 |
aatgttatgtttatcacgtgtaataatggcaataaagtaaatcagcc-taaagcactaaattatttctt |
45310338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 83 - 227
Target Start/End: Original strand, 54632206 - 54632356
Alignment:
| Q |
83 |
ctaatgttattgttgcttgtttatgtctctatcatgtctaacttagatattccttccttgtttatcttct------aatgttatgtttatcacgtctaat |
176 |
Q |
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| T |
54632206 |
ctaatgttattgttgcttgcttatgactctatcatgtctaacttaaatattccttctttgtttatattctaattctaatgttatgtttatcacgtgcaat |
54632305 |
T |
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| Q |
177 |
aatggcattagagtaaatcatccttaaagcacttaaatatttcttttgttt |
227 |
Q |
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| T |
54632306 |
aatggcattagagtaaatcatccttaaagcacttaaatatttcttttgttt |
54632356 |
T |
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