View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3547_low_96 (Length: 204)
Name: NF3547_low_96
Description: NF3547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3547_low_96 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 108 - 204
Target Start/End: Original strand, 45540897 - 45540993
Alignment:
| Q |
108 |
atcaagattcagatgtagcagaacactccacgccaacttcgtctaatcaaaacatagaacaccacaaaattaaaggaccagagatacaaaacccgcc |
204 |
Q |
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| T |
45540897 |
atcaacattcagatgtagcagaacactccacgccaacttcgtctaatcaaaacatagaacaccacaaaattaaaggaccagagatacaaaacccgcc |
45540993 |
T |
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Target: chr4; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 45540728 - 45540826
Alignment:
| Q |
17 |
actatccatacggggacatcatcttttccaactttagaaccattaaaccaagaacaaacgtgcgcttctataaatgtcacaggtaatgcaaatcaagat |
115 |
Q |
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| T |
45540728 |
actatccatacagggacatcatcttttccaactttagaatcattaaaccaagaacaaacgtgcgcttctataaatgtcacaagtaatgcaaatcaagat |
45540826 |
T |
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