View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3548_high_2 (Length: 309)
Name: NF3548_high_2
Description: NF3548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3548_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 49975005 - 49974733
Alignment:
| Q |
13 |
gagacacagggcatagggtacgtatacattttgtgtagttattgattgtgctaaaaagagttgggaggggaaggttgagaacatgtgatgtatggtccac |
112 |
Q |
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| T |
49975005 |
gagacacagggcatagggtacgtatacattttgtgtagttattgattgtgctaaaaagagttgggaggggaaggtcgagaacatgtgatgtatggtccac |
49974906 |
T |
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| Q |
113 |
aatagcttaatacctccatcttgatgtaaaagtctacaaccccgtaacttagacttatagcaccaacgatacgttgctatcattagggttttataatcta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49974905 |
aatagcttaatacctccatcttgatgtaaaagtctacaaccccgtaacttagacttatagcaccaacgatacgttgctatcattagggttttataatcta |
49974806 |
T |
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| Q |
213 |
taagctgagatgagatagtctcaacctcatatgtgttgcnnnnnnnnctttgaaatttggtatatctcatagatgacat |
291 |
Q |
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| T |
49974805 |
taagctg-----agatagtctcaacctcatatgtgttgc-tttttttctttgaaatttggtatatctcatagatgacat |
49974733 |
T |
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