View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3548_high_3 (Length: 253)

Name: NF3548_high_3
Description: NF3548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3548_high_3
NF3548_high_3
[»] chr3 (2 HSPs)
chr3 (4-235)||(6790034-6790265)
chr3 (53-220)||(31135116-31135283)
[»] chr4 (1 HSPs)
chr4 (4-235)||(23565956-23566187)
[»] chr6 (3 HSPs)
chr6 (68-206)||(24546290-24546428)
chr6 (174-224)||(15867009-15867059)
chr6 (174-224)||(33867861-33867911)
[»] scaffold0251 (1 HSPs)
scaffold0251 (73-223)||(4977-5127)
[»] chr7 (3 HSPs)
chr7 (42-224)||(21632595-21632776)
chr7 (168-223)||(6686978-6687033)
chr7 (144-193)||(9879503-9879552)
[»] chr5 (3 HSPs)
chr5 (161-230)||(33688523-33688592)
chr5 (73-208)||(25075761-25075896)
chr5 (73-208)||(25133730-25133865)
[»] chr1 (3 HSPs)
chr1 (174-224)||(3283242-3283292)
chr1 (174-224)||(9310847-9310897)
chr1 (172-224)||(5926042-5926094)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 6790265 - 6790034
Alignment:
Q  4 atctcaccggaaacattgtgacgagaacttccggcgcatcagaaatgaagaaatcagattcgcaattcgtcaattcaggttcaagaatttccaatttctc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6790265 atctcaccggaaacattgtgacgagaacttccggcgcatcagaaatgaagaaatcagagtcgcaattcgtcaattcaggttcaagaatttccaatttctc 6790166  T
Q  104 atcttcttgcgaatcaacaaacacataattgttttcattgacgatgttgcagcaaggagtaacaagagcacatgaaatctccccaatcttgatggagaat 203  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6790165 atcttcttgcgaatcaacaaacacataattgttttcattgaccatgttgcagcaaggagtaacaagagcacatgaaatctccccaatcttgatcgagaat 6790066  T
Q  204 ccatcaaattctggttcgattacaggagttga 235  Q
    ||||||||||||||||||||||||||||||||    
T  6790065 ccatcaaattctggttcgattacaggagttga 6790034  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 220
Target Start/End: Original strand, 31135116 - 31135283
Alignment:
Q  53 gaaatcagattcgcaattcgtcaattcaggttcaagaatttccaatttctcatcttcttgcgaatcaacaaacacataattgttttcattgacgatgttg 152  Q
    ||||||||| ||||  ||| ||||||||  ||||||||  | |  ||||||||| |||||   | ||||||||||| ||| ||  | || ||||||||||    
T  31135116 gaaatcagagtcgcggttcttcaattcatattcaagaaccttctgtttctcatcatcttgtagaacaacaaacacaaaatcgtcgtaatcgacgatgttg 31135215  T
Q  153 cagcaaggagtaacaagagcacatgaaatctccccaatcttgatggagaatccatcaaattctggttc 220  Q
    |   ||| |||||| ||| |||| || ||||||| | |||||||||||||||||||||||| ||||||    
T  31135216 ctagaagcagtaacgagaacacaagatatctccctagtcttgatggagaatccatcaaattatggttc 31135283  T

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Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 4 - 235
Target Start/End: Original strand, 23565956 - 23566187
Alignment:
Q  4 atctcaccggaaacattgtgacgagaacttccggcgcatcagaaatgaagaaatcagattcgcaattcgtcaattcaggttcaagaatttccaatttctc 103  Q
    ||||||| || || |||||||||| |||||||||| | |||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23565956 atctcactggtaaaattgtgacgaaaacttccggcacttcagaaacaaagaaatcagagtcgcaattcgtcaattcaggttcaagaatttccaatttctc 23566055  T
Q  104 atcttcttgcgaatcaacaaacacataattgttttcattgacgatgttgcagcaaggagtaacaagagcacatgaaatctccccaatcttgatggagaat 203  Q
    |||||||||| ||| |||||||||| |||||| |||||| |||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  23566056 atcttcttgcaaattaacaaacacagaattgtcttcatttacgatgttgctgcaaggagcaacaagaacacatgaaatctccccaatcttgatggagaat 23566155  T
Q  204 ccatcaaattctggttcgattacaggagttga 235  Q
    ||||||||||||||| |||||||| |||||||    
T  23566156 ccatcaaattctggtgcgattacatgagttga 23566187  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 206
Target Start/End: Complemental strand, 24546428 - 24546290
Alignment:
Q  68 attcgtcaattcaggttcaagaatttccaatttctcatcttcttgcgaatcaacaaacacataattgttttcattgacgatgttgcagcaaggagtaaca 167  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||| ||| || ||| |||||||||||||||||||||   |||    
T  24546428 attcttcaattcaggttcaagaatctccaatttctcattttcttgcgaatcaacgaacacacaatcgtcttctttgacgatgttgcagcaaggatcgaca 24546329  T
Q  168 agagcacatgaaatctccccaatcttgatggagaatcca 206  Q
    |  || || |||||||| |||||||||||||||||||||    
T  24546328 actgcgcaagaaatctcaccaatcttgatggagaatcca 24546290  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 15867059 - 15867009
Alignment:
Q  174 catgaaatctccccaatcttgatggagaatccatcaaattctggttcgatt 224  Q
    ||||||||||| ||||| |||| ||||||||||||||||| ||||||||||    
T  15867059 catgaaatctcaccaattttgacggagaatccatcaaattttggttcgatt 15867009  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 33867911 - 33867861
Alignment:
Q  174 catgaaatctccccaatcttgatggagaatccatcaaattctggttcgatt 224  Q
    ||||||||||| ||||| |||| |||||||||||| |||| ||||||||||    
T  33867911 catgaaatctcaccaattttgacggagaatccatcgaattttggttcgatt 33867861  T

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Target: scaffold0251 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 73 - 223
Target Start/End: Complemental strand, 5127 - 4977
Alignment:
Q  73 tcaattcaggttcaagaatttccaatttctcatcttcttgcgaatcaacaaacacataattgttttcattgacgatgttgcagcaaggagtaacaagagc 172  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||| |||| | ||| || ||| ||||||||||||||||||||| | |  |  ||    
T  5127 tcaattcaggttcaagaacctccaatttctcatcttcttgcgaatcaacgaacatacaatcgtcttctttgacgatgttgcagcaaggattgatgattgc 5028  T
Q  173 acatgaaatctccccaatcttgatggagaatccatcaaattctggttcgat 223  Q
     || |||||||| ||||| ||||||||||||||||| |||| |||||||||    
T  5027 gcaagaaatctcaccaattttgatggagaatccatcgaattttggttcgat 4977  T

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Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 224
Target Start/End: Original strand, 21632595 - 21632776
Alignment:
Q  42 tcagaaatgaagaaatcagattcgcaattcgtcaattcaggttcaagaatttccaatttctcatcttcttgcgaatcaacaaacacataattgttttcat 141  Q
    |||||||| | ||||||||| |||| |||| |||||||||||||||||| |||||||||||||||||||||||| ||||  |||||| ||| || ||| |    
T  21632595 tcagaaataacgaaatcagagtcgcgattcttcaattcaggttcaagaacttccaatttctcatcttcttgcgattcaatgaacacacaatcgtcttctt 21632694  T
Q  142 tgacgatgttgcagcaaggagtaacaagagcacatgaaatctccccaatcttgatggagaatccatcaaattctggttcgatt 224  Q
    ||||||||||||||||||||   || |   | || |||||||| ||||||||||| || ||||||||||||| ||||| ||||    
T  21632695 tgacgatgttgcagcaaggatcgacgattacgcaagaaatctcaccaatcttgat-gaaaatccatcaaattttggtttgatt 21632776  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 6686978 - 6687033
Alignment:
Q  168 agagcacatgaaatctccccaatcttgatggagaatccatcaaattctggttcgat 223  Q
    |||||| | |||||||| ||||||||||||||||||||||||||||||||||||||    
T  6686978 agagcataagaaatctcaccaatcttgatggagaatccatcaaattctggttcgat 6687033  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 9879503 - 9879552
Alignment:
Q  144 acgatgttgcagcaaggagtaacaagagcacatgaaatctccccaatctt 193  Q
    |||||||||| | ||| |||||||||||||||  ||||||||||||||||    
T  9879503 acgatgttgctgaaagaagtaacaagagcacaataaatctccccaatctt 9879552  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 33688592 - 33688523
Alignment:
Q  161 agtaacaagagcacatgaaatctccccaatcttgatggagaatccatcaaattctggttcgattacagga 230  Q
    ||||| |||| |||||||||| |||||||| |||||||||||||||||||||||||||| ||||| ||||    
T  33688592 agtaataagaacacatgaaatttccccaattttgatggagaatccatcaaattctggtttgattaaagga 33688523  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 208
Target Start/End: Original strand, 25075761 - 25075896
Alignment:
Q  73 tcaattcaggttcaagaatttccaatttctcatcttcttgcgaatcaacaaacacataattgttttcattgacgatgttgcagcaaggagtaacaagagc 172  Q
    ||||||||||||| ||||  ||| |||||||||||||||| ||||||||  ||||| ||| || ||||||||||||||| || ||||||   |  |   |    
T  25075761 tcaattcaggttctagaacctccgatttctcatcttcttgtgaatcaacccacacagaatcgtcttcattgacgatgttacaacaaggatcgatgattac 25075860  T
Q  173 acatgaaatctccccaatcttgatggagaatccatc 208  Q
     || |||||||| |||||||||||||||||||||||    
T  25075861 gcaagaaatctcaccaatcttgatggagaatccatc 25075896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 208
Target Start/End: Original strand, 25133730 - 25133865
Alignment:
Q  73 tcaattcaggttcaagaatttccaatttctcatcttcttgcgaatcaacaaacacataattgttttcattgacgatgttgcagcaaggagtaacaagagc 172  Q
    ||||||||||||| ||||  ||| |||||||||||||||| ||||||||  ||||| ||| || ||||||||||||||| || ||||||   |  |   |    
T  25133730 tcaattcaggttctagaacctccgatttctcatcttcttgtgaatcaacccacacagaatcgtcttcattgacgatgttacaacaaggatcgatgattac 25133829  T
Q  173 acatgaaatctccccaatcttgatggagaatccatc 208  Q
     || |||||||| |||||||||||||||||||||||    
T  25133830 gcaagaaatctcaccaatcttgatggagaatccatc 25133865  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 3283292 - 3283242
Alignment:
Q  174 catgaaatctccccaatcttgatggagaatccatcaaattctggttcgatt 224  Q
    ||||||||||| ||||| |||| ||||||||||||||||| ||||||||||    
T  3283292 catgaaatctcaccaattttgacggagaatccatcaaattttggttcgatt 3283242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 9310897 - 9310847
Alignment:
Q  174 catgaaatctccccaatcttgatggagaatccatcaaattctggttcgatt 224  Q
    ||||||||||| ||||| |||| ||||||||||||||||| ||||||||||    
T  9310897 catgaaatctcaccaattttgacggagaatccatcaaattttggttcgatt 9310847  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 5926042 - 5926094
Alignment:
Q  172 cacatgaaatctccccaatcttgatggagaatccatcaaattctggttcgatt 224  Q
    |||||||||  || |||||||||||||| | ||||||||||| ||||||||||    
T  5926042 cacatgaaaaatcaccaatcttgatggacattccatcaaattttggttcgatt 5926094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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