View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3548_low_1 (Length: 739)
Name: NF3548_low_1
Description: NF3548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3548_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 11 - 378
Target Start/End: Original strand, 23948952 - 23949319
Alignment:
| Q |
11 |
catcatcaactaaacaatccatatcaccaattacagaacttcaatcaatttcacactctaataatctatatagcatcgacatttcagatctaagtcgtat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23948952 |
catcatcaactaaacaatccatatcaccaattacagaacttcaatcaatttcacactctaataatctatatagcatcgacatttcagatctaagtcgtat |
23949051 |
T |
|
| Q |
111 |
ccgacacaaacacgacactgactcatatggttacgttcaatcactaacagacactttctcaaattattatgaattattacgatacctacgtgttaatgtc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23949052 |
ccgacacaaacacgacactgactcatatggttacgttcaatcactaacagacactttctcaaattattatgaattattacgatacctaagtgttaatgtc |
23949151 |
T |
|
| Q |
211 |
ggtgtctacgccataataattgatttcccaagtaaacataaaaccacaaataattgtgagtccttctatcatcatctagataactcacaaaattgagaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23949152 |
ggtgtctacgccataataattgatttcccaagtaaacataaaaccacaaataattgtgagtccttctatcatcatctagataactcacaaaattgagaaa |
23949251 |
T |
|
| Q |
311 |
tttctcaatcaatgccatcaatcaacaaaagggtgtctaaattttatctaaaagcttcaaaatttatc |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23949252 |
tttctcaatcaatgccatcaatcaacaaaagggtgtctaaattttatctaaaagcttcaaaatttatc |
23949319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 424 - 739
Target Start/End: Original strand, 23949363 - 23949678
Alignment:
| Q |
424 |
gggtttcaattgaactgacctatttcccttaatcttgaaccaagcctcagcacaattcttatgagcagcagctaaatcctctttacaagaacagcccaat |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23949363 |
gggtttcaattgaactgacctatttcccttaatcttgaaccaagcctcggcacaattcttatgagcagcagctaaatcctctttacaagaacagcccaat |
23949462 |
T |
|
| Q |
524 |
tcaattggaggaccagattcatggctttcactctccaaacccatatgacaaatcctacaatctttctccactttagccaaatgcaccttattctcaggaa |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23949463 |
tcaattggaggaccagattcatggctttcactctccaaacccatatgacaaatcctacaatctttctccactttagccaaatgcaccttattctcaggaa |
23949562 |
T |
|
| Q |
624 |
ccctctcaattctaatttcaacctcaacagaacaatcagaaacagaagaaactcttctagaatcatgaacacaaccaagttcaggatcagaaacacaagc |
723 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23949563 |
ccctctcaattctaatttcaacctcaacagaacaatcagaaacagaagaaactcttctagaatcatgaacacaaccaagttcaggatcagaaacacaagc |
23949662 |
T |
|
| Q |
724 |
aaaagtgtaatcatca |
739 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
23949663 |
aaaagtgtaatcatca |
23949678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 452 - 613
Target Start/End: Original strand, 34933754 - 34933915
Alignment:
| Q |
452 |
ttaatcttgaaccaagcctcagcacaattcttatgagcagcagctaaatcctctttacaagaacagcccaattcaattggaggaccagattcatggctt- |
550 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||| | ||| ||| |||| || | || || ||| |||||||||||| || |
|
|
| T |
34933754 |
ttaatcttgaaccaagcctcagcacaatgcttatgagcagcagccaaatcatttttgcaaaaacaaccaagctccataggaattccagattcatggtttg |
34933853 |
T |
|
| Q |
551 |
tcactctccaaacccatatgacaaatcctacaatctttctccactttagccaaatgcacctta |
613 |
Q |
| |
|
||| | |||| || | |||||||||||||||||| ||||||| ||| |||||||||||||| |
|
|
| T |
34933854 |
tca-tatccatactaagatgacaaatcctacaatccctctccaccttatccaaatgcacctta |
34933915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University