View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3548_low_4 (Length: 215)

Name: NF3548_low_4
Description: NF3548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3548_low_4
NF3548_low_4
[»] chr5 (16 HSPs)
chr5 (59-195)||(5511926-5512067)
chr5 (1-53)||(3851356-3851407)
chr5 (1-52)||(26300105-26300155)
chr5 (1-55)||(3851459-3851512)
chr5 (20-54)||(8803288-8803322)
chr5 (1-51)||(19531397-19531446)
chr5 (1-54)||(23914833-23914885)
chr5 (1-54)||(43446851-43446903)
chr5 (1-52)||(19531295-19531345)
chr5 (1-52)||(23914937-23914987)
chr5 (20-51)||(32198855-32198886)
chr5 (1-48)||(42013820-42013866)
chr5 (1-48)||(43447464-43447510)
chr5 (1-51)||(37944597-37944646)
chr5 (1-51)||(38835621-38835671)
chr5 (1-53)||(26300207-26300258)
[»] chr7 (16 HSPs)
chr7 (1-53)||(38238776-38238828)
chr7 (1-53)||(4407715-4407766)
chr7 (1-52)||(22106763-22106813)
chr7 (1-52)||(34703539-34703589)
chr7 (1-52)||(40529538-40529588)
chr7 (1-55)||(38238880-38238933)
chr7 (1-53)||(27554593-27554644)
chr7 (1-52)||(25079303-25079353)
chr7 (1-48)||(46943942-46943988)
chr7 (1-55)||(10422904-10422957)
chr7 (1-51)||(18234441-18234490)
chr7 (1-54)||(2297323-2297375)
chr7 (1-53)||(2360442-2360493)
chr7 (20-52)||(6455663-6455695)
chr7 (18-54)||(8595259-8595295)
chr7 (1-45)||(40417002-40417045)
[»] chr4 (6 HSPs)
chr4 (1-51)||(5418611-5418660)
chr4 (1-52)||(5281231-5281281)
chr4 (1-52)||(17655158-17655208)
chr4 (1-51)||(44156096-44156145)
chr4 (1-51)||(52817663-52817712)
chr4 (1-53)||(3504070-3504121)
[»] chr3 (10 HSPs)
chr3 (1-51)||(38455261-38455310)
chr3 (1-52)||(50261029-50261080)
chr3 (1-51)||(52168278-52168327)
chr3 (1-52)||(51617325-51617375)
chr3 (1-52)||(51617427-51617477)
chr3 (5-51)||(21403892-21403937)
chr3 (1-54)||(12568450-12568502)
chr3 (1-54)||(13544914-13544966)
chr3 (1-54)||(38455157-38455209)
chr3 (1-53)||(33412561-33412612)
[»] scaffold0024 (2 HSPs)
scaffold0024 (1-53)||(120241-120292)
scaffold0024 (1-52)||(120139-120189)
[»] chr8 (9 HSPs)
chr8 (1-51)||(1739661-1739710)
chr8 (1-51)||(9056117-9056166)
chr8 (1-54)||(40098856-40098908)
chr8 (1-53)||(9056014-9056065)
chr8 (1-44)||(9808376-9808418)
chr8 (1-52)||(40098754-40098804)
chr8 (1-51)||(14381233-14381282)
chr8 (1-51)||(14381334-14381383)
chr8 (1-49)||(33574883-33574930)
[»] chr1 (22 HSPs)
chr1 (1-51)||(8258039-8258088)
chr1 (1-51)||(33603986-33604035)
chr1 (1-53)||(2352991-2353042)
chr1 (1-53)||(31008252-31008303)
chr1 (1-53)||(48022588-48022639)
chr1 (1-52)||(14418153-14418203)
chr1 (1-52)||(23944031-23944081)
chr1 (1-52)||(33604087-33604137)
chr1 (1-52)||(35366965-35367015)
chr1 (1-52)||(37734869-37734919)
chr1 (1-52)||(48022691-48022741)
chr1 (1-51)||(639794-639843)
chr1 (1-51)||(639895-639944)
chr1 (1-51)||(3384218-3384267)
chr1 (1-51)||(3384319-3384368)
chr1 (1-51)||(4060267-4060316)
chr1 (1-51)||(8257938-8257987)
chr1 (1-47)||(32796842-32796887)
chr1 (1-51)||(35156260-35156309)
chr1 (1-54)||(13043805-13043857)
chr1 (1-54)||(29302056-29302108)
chr1 (1-54)||(29302161-29302213)
[»] chr2 (6 HSPs)
chr2 (1-54)||(5574206-5574258)
chr2 (11-56)||(20057211-20057256)
chr2 (1-54)||(34248511-34248563)
chr2 (1-54)||(38594336-38594388)
chr2 (1-54)||(38597932-38597984)
chr2 (1-53)||(7837078-7837129)
[»] chr6 (6 HSPs)
chr6 (1-52)||(17773597-17773647)
chr6 (1-52)||(21506457-21506507)
chr6 (1-52)||(21998033-21998083)
chr6 (1-52)||(30397719-30397769)
chr6 (1-54)||(28577593-28577645)
chr6 (1-53)||(31536304-31536355)
[»] scaffold0536 (1 HSPs)
scaffold0536 (1-51)||(4046-4095)
[»] scaffold0047 (1 HSPs)
scaffold0047 (1-51)||(61258-61307)
[»] scaffold0039 (2 HSPs)
scaffold0039 (1-51)||(54484-54533)
scaffold0039 (1-53)||(54381-54432)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-54)||(17262-17315)


Alignment Details
Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 59 - 195
Target Start/End: Complemental strand, 5512067 - 5511926
Alignment:
Q  59 tacccttctagttctacaatgatcaatcatctcaccattcatgaatga-ct----gctagtatatcaaatgttttgacggtcaaagttctttatagagat 153  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||| ||    |||||||||||||||||||||||||||||||||||||||||||||    
T  5512067 tacccttctagttctacaatgatcaatcatctccctattcatgaatgatctgctagctagtatatcaaatgttttgacggtcaaagttctttatagagat 5511968  T
Q  154 ttgatttgattttcagttagccagctcttggtaagtacatct 195  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5511967 ttgatttgattttcagttagccagctcttggtaagtacatct 5511926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3851407 - 3851356
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtata 53  Q
    ||||||||||||||||| | |||||| ||||||||||||||||||||||||||    
T  3851407 aatgtatctaaaaagtgga-tttttgcttatattagtgatcggagggtgtata 3851356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26300155 - 26300105
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    |||||||||||||||| ||||||||| |||||||||||| ||||||||||||    
T  26300155 aatgtatctaaaaagt-aaatttttgcttatattagtgaccggagggtgtat 26300105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3851459 - 3851512
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtatatg 55  Q
    |||||||||||||| |||| |||||| |||||||||||| |||||||||||||||    
T  3851459 aatgtatctaaaaaatgaa-tttttgcttatattagtgaccggagggtgtatatg 3851512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 8803322 - 8803288
Alignment:
Q  20 atttttgtttatattagtgatcggagggtgtatat 54  Q
    |||||||||||||||||||||||||||||||||||    
T  8803322 atttttgtttatattagtgatcggagggtgtatat 8803288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19531397 - 19531446
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  19531397 aatgtatctaaaaagtgaa-tttttgcttatattagtgatcggaggatgta 19531446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23914885 - 23914833
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtatat 54  Q
    ||||||||||||||||| | |||||| |||||||||||| ||||||||||||||    
T  23914885 aatgtatctaaaaagtgga-tttttgcttatattagtgaccggagggtgtatat 23914833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43446903 - 43446851
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtatat 54  Q
    |||||||||||||||| ||||||||| |||||||||| | ||||||||||||||    
T  43446903 aatgtatctaaaaagt-aaatttttgcttatattagtaaccggagggtgtatat 43446851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 19531345 - 19531295
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    ||||||||||||||||||| |||||| ||||||| |||| ||||||||||||    
T  19531345 aatgtatctaaaaagtgaa-tttttgcttatatttgtgaccggagggtgtat 19531295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 23914937 - 23914987
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    ||||||||| ||||||||| |||||| |||||||||||| ||||||||||||    
T  23914937 aatgtatcttaaaagtgaa-tttttgcttatattagtgaccggagggtgtat 23914987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 32198886 - 32198855
Alignment:
Q  20 atttttgtttatattagtgatcggagggtgta 51  Q
    ||||||||||||||||||||||||||||||||    
T  32198886 atttttgtttatattagtgatcggagggtgta 32198855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 42013866 - 42013820
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggt 48  Q
    ||||||||||||||||||| |||||| |||||||||||| ||||||||    
T  42013866 aatgtatctaaaaagtgaa-tttttgcttatattagtgaccggagggt 42013820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 43447464 - 43447510
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggt 48  Q
    ||||||||||||||||||| |||||| |||||||||||| ||||||||    
T  43447464 aatgtatctaaaaagtgaa-tttttgcttatattagtgaccggagggt 43447510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37944646 - 37944597
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||| ||||    
T  37944646 aatgtatctaaaaagtgaa-tttttgcttatattagtgaccggaggatgta 37944597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 38835621 - 38835671
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    ||||||| ||||||||||| |||||| |||||||||||| | |||||||||    
T  38835621 aatgtatttaaaaagtgaattttttgcttatattagtgaccagagggtgta 38835671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26300207 - 26300258
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtata 53  Q
    |||||||||||||||| |||||||  || |||||||||| |||||||||||||    
T  26300207 aatgtatctaaaaagtaaaattttactt-atattagtgaccggagggtgtata 26300258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 38238828 - 38238776
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtata 53  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  38238828 aatgtatctaaaaagtgaaatttttgcttatattagtgaccggagggtgtata 38238776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4407715 - 4407766
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtata 53  Q
    ||||||||||||||||| | ||||||||||||||||||| |||||||||||||    
T  4407715 aatgtatctaaaaagtgga-tttttgtttatattagtgaccggagggtgtata 4407766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 22106763 - 22106813
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    |||||||||||||| ||||||||| |||||||||||||||| ||||||||||    
T  22106763 aatgtatctaaaaaatgaaatttt-gtttatattagtgatcagagggtgtat 22106813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34703539 - 34703589
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    ||||||||||||||||||| |||||| |||||||||||| ||||||||||||    
T  34703539 aatgtatctaaaaagtgaa-tttttgcttatattagtgaccggagggtgtat 34703589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40529588 - 40529538
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    |||||||||||||| ||||||||| |||||||||||||||| ||||||||||    
T  40529588 aatgtatctaaaaaatgaaatttt-gtttatattagtgatcagagggtgtat 40529538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 38238880 - 38238933
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtatatg 55  Q
    |||||||||||||||| | ||||||| |||||||||||| |||||||||||||||    
T  38238880 aatgtatctaaaaagt-agatttttgcttatattagtgaccggagggtgtatatg 38238933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27554593 - 27554644
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtata 53  Q
    ||||||| | |||||| ||||||||| ||||||||||||||||||||||||||    
T  27554593 aatgtattttaaaagt-aaatttttgcttatattagtgatcggagggtgtata 27554644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 25079303 - 25079353
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    |||||||||||||||| | |||||||||||||||||||| |||||| |||||    
T  25079303 aatgtatctaaaaagt-agatttttgtttatattagtgaccggaggatgtat 25079353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 46943988 - 46943942
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggt 48  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||||||    
T  46943988 aatgtatctaaaaagtgga-tttttgtttatattagtgaccggagggt 46943942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10422904 - 10422957
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtatatg 55  Q
    |||| ||||||||| | ||||||||| |||||||||||| |||||||||||||||    
T  10422904 aatgaatctaaaaatt-aaatttttgcttatattagtgaccggagggtgtatatg 10422957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 18234441 - 18234490
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    |||||||||||||| | |||||||||||||||||||||| ||||| |||||    
T  18234441 aatgtatctaaaaatt-aaatttttgtttatattagtgaccggagagtgta 18234490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2297375 - 2297323
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtatat 54  Q
    |||| ||||||||| | ||||||||| |||||||||||| ||||||||||||||    
T  2297375 aatgaatctaaaaa-tcaaatttttgcttatattagtgaccggagggtgtatat 2297323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2360493 - 2360442
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtata 53  Q
    |||| ||||||||| | ||||||||| |||||||||||| |||||||||||||    
T  2360493 aatgaatctaaaaa-tcaaatttttgcttatattagtgaccggagggtgtata 2360442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 6455663 - 6455695
Alignment:
Q  20 atttttgtttatattagtgatcggagggtgtat 52  Q
    ||||||| |||||||||||||||||||||||||    
T  6455663 atttttgcttatattagtgatcggagggtgtat 6455695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 8595259 - 8595295
Alignment:
Q  18 aaatttttgtttatattagtgatcggagggtgtatat 54  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  8595259 aaatttttgcttatattagtgaccggagggtgtatat 8595295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40417002 - 40417045
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggag 45  Q
    ||||||||||||||||| |||||||| |||||||||||| |||||    
T  40417002 aatgtatctaaaaagtg-aatttttgcttatattagtgaccggag 40417045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5418611 - 5418660
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  5418611 aatgtatctaaaaagt-aaatttttgcttatattagtgatcggagggtgta 5418660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 5281231 - 5281281
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    ||||||||||||||||||| |||||  |||||||||||| ||||||||||||    
T  5281231 aatgtatctaaaaagtgaa-tttttacttatattagtgaccggagggtgtat 5281281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 17655158 - 17655208
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    |||| ||||||||| | |||||||||||||| ||||||||||||||||||||    
T  17655158 aatgaatctaaaaa-tcaaatttttgtttatcttagtgatcggagggtgtat 17655208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 44156096 - 44156145
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    ||||||||||||||||||| |||||| ||||||||||||  ||||||||||    
T  44156096 aatgtatctaaaaagtgaa-tttttgcttatattagtgacaggagggtgta 44156145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 52817663 - 52817712
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    ||||||||||||||||| | |||||| |||||||||||| |||||||||||    
T  52817663 aatgtatctaaaaagtgga-tttttgcttatattagtgaccggagggtgta 52817712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3504121 - 3504070
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtata 53  Q
    |||| ||||||||| |||| |||||||||||||||||||| ||| ||||||||    
T  3504121 aatgaatctaaaaaatgaa-tttttgtttatattagtgattggatggtgtata 3504070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 38455261 - 38455310
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  38455261 aatgtatctaaaaagt-aaatttttgtttatattagtgaccggagggtgta 38455310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 50261029 - 50261080
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    ||||||||| ||||||||| |||||| |||||||||||| ||||||||||||    
T  50261029 aatgtatcttaaaagtgaattttttgcttatattagtgaccggagggtgtat 50261080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 52168327 - 52168278
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    |||||||||||||||| ||||||||| |||||||||||| |||||||||||    
T  52168327 aatgtatctaaaaagt-aaatttttgcttatattagtgaccggagggtgta 52168278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 51617375 - 51617325
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    ||||||||||||||||| | |||||| |||||||||||| ||||||||||||    
T  51617375 aatgtatctaaaaagtgga-tttttggttatattagtgaccggagggtgtat 51617325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 51617427 - 51617477
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    ||||||||||||||||| |||||| | |||||||||||| ||||||||||||    
T  51617427 aatgtatctaaaaagtggaatttt-gcttatattagtgaccggagggtgtat 51617477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 21403937 - 21403892
Alignment:
Q  5 tatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    |||||||||||| | ||||||||||||||||||||||||||| ||||    
T  21403937 tatctaaaaagt-agatttttgtttatattagtgatcggaggatgta 21403892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 12568502 - 12568450
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtatat 54  Q
    ||||||| |||||||| | |||||||||||||||||||| |||||| |||||||    
T  12568502 aatgtatttaaaaagt-agatttttgtttatattagtgaccggaggatgtatat 12568450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 13544966 - 13544914
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtatat 54  Q
    ||||||| |||||||| | |||||||||||||||||||| |||||| |||||||    
T  13544966 aatgtatttaaaaagt-agatttttgtttatattagtgaccggaggatgtatat 13544914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 38455209 - 38455157
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtatat 54  Q
    ||||||||||||||||| | |||||| |||||||| ||| ||||||||||||||    
T  38455209 aatgtatctaaaaagtgga-tttttgcttatattaatgaccggagggtgtatat 38455157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33412561 - 33412612
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtata 53  Q
    ||||||||||||||||| | |||||| ||||||||||||  ||||||||||||    
T  33412561 aatgtatctaaaaagtgga-tttttgcttatattagtgactggagggtgtata 33412612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 120241 - 120292
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtata 53  Q
    |||||||||||||||| ||||||||| |||||||||||| |||||||||||||    
T  120241 aatgtatctaaaaagt-aaatttttgcttatattagtgaccggagggtgtata 120292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 120189 - 120139
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    |||||||||||||||||||| ||||| |||||||||||| ||||||||||||    
T  120189 aatgtatctaaaaagtgaaa-ttttgcttatattagtgaccggagggtgtat 120139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 1739661 - 1739710
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    |||||||||||||||| ||||||||| |||||||||||| |||||||||||    
T  1739661 aatgtatctaaaaagt-aaatttttgcttatattagtgaccggagggtgta 1739710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9056117 - 9056166
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  9056117 aatgtatctaaaaagtgaa-tttttgcttatattagtgaccggagggtgta 9056166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 40098856 - 40098908
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtatat 54  Q
    ||||||||||||||||| | |||||| |||||||||||| ||||||||||||||    
T  40098856 aatgtatctaaaaagtgga-tttttgcttatattagtgaccggagggtgtatat 40098908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 9056065 - 9056014
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtata 53  Q
    ||||||||||||||||||| |||||| ||||||| |||| |||||||||||||    
T  9056065 aatgtatctaaaaagtgaa-tttttgcttatatttgtgaccggagggtgtata 9056014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9808418 - 9808376
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcgga 44  Q
    ||||||| |||||||| |||||||||||||||||||||||||||    
T  9808418 aatgtatataaaaagt-aaatttttgtttatattagtgatcgga 9808376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40098804 - 40098754
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    |||||||||||||||| | ||||||| |||||||||||| ||||||||||||    
T  40098804 aatgtatctaaaaagt-agatttttgcttatattagtgaccggagggtgtat 40098754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 14381282 - 14381233
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    ||||||||||||||||| | |||||| |||||||||||| |||||||||||    
T  14381282 aatgtatctaaaaagtgga-tttttgcttatattagtgaccggagggtgta 14381233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 14381334 - 14381383
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    ||||||||||||||||| | ||||||||||||||||||| |||||| ||||    
T  14381334 aatgtatctaaaaagtgga-tttttgtttatattagtgaccggaggatgta 14381383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33574883 - 33574930
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtg 49  Q
    ||||||||||||| ||| | ||||||||||||||||||| |||||||||    
T  33574883 aatgtatctaaaatgtgga-tttttgtttatattagtgaccggagggtg 33574930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 8258039 - 8258088
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  8258039 aatgtatctaaaaagtgaa-tttttgcttatattagtgaccggagggtgta 8258088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33604035 - 33603986
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    ||||||||| ||||||||| ||||||||||||||||||| |||||||||||    
T  33604035 aatgtatcttaaaagtgaa-tttttgtttatattagtgaccggagggtgta 33603986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2352991 - 2353042
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtata 53  Q
    |||||||||||||| | ||||||||| ||||||||||||||||| ||||||||    
T  2352991 aatgtatctaaaaaat-aaatttttgcttatattagtgatcggaaggtgtata 2353042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 31008303 - 31008252
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtata 53  Q
    |||||||||||||||| | ||||||| |||||||||||| |||||||||||||    
T  31008303 aatgtatctaaaaagt-agatttttgcttatattagtgaccggagggtgtata 31008252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 48022639 - 48022588
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtata 53  Q
    ||||||||||||||||| | |||||| |||||||||||| |||||||||||||    
T  48022639 aatgtatctaaaaagtgga-tttttgcttatattagtgaccggagggtgtata 48022588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 14418153 - 14418203
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    ||||||||||||||||||| |||||| |||||||| ||| ||||||||||||    
T  14418153 aatgtatctaaaaagtgaa-tttttgcttatattaatgaccggagggtgtat 14418203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 23944081 - 23944031
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    |||||||||||||| |||| |||||| |||||||||||| ||||||||||||    
T  23944081 aatgtatctaaaaaatgaa-tttttgcttatattagtgaccggagggtgtat 23944031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 33604087 - 33604137
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    ||||||||||||||||| | |||||| |||||||||||| ||||||||||||    
T  33604087 aatgtatctaaaaagtgga-tttttgcttatattagtgaccggagggtgtat 33604137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 35367015 - 35366965
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    |||||||||||||| | | |||||| ||||||||||||||||||||||||||    
T  35367015 aatgtatctaaaaatt-agatttttatttatattagtgatcggagggtgtat 35366965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37734869 - 37734919
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    ||||||||||||||||| | |||||| |||||||||||| ||||||||||||    
T  37734869 aatgtatctaaaaagtgga-tttttgcttatattagtgaccggagggtgtat 37734919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 48022691 - 48022741
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    ||||||||| ||||||||| |||||| |||||||||||| ||||||||||||    
T  48022691 aatgtatcttaaaagtgaa-tttttgcttatattagtgaccggagggtgtat 48022741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 639843 - 639794
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    ||||||||||||||||| | |||||| |||||||||||| |||||||||||    
T  639843 aatgtatctaaaaagtgga-tttttgcttatattagtgaccggagggtgta 639794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 639895 - 639944
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    ||||||||| ||||||||| |||||| |||||||||||| |||||||||||    
T  639895 aatgtatcttaaaagtgaa-tttttgcttatattagtgaccggagggtgta 639944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3384267 - 3384218
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    ||||||||||||||||||| |||||| |||||||| ||| |||||||||||    
T  3384267 aatgtatctaaaaagtgaa-tttttgcttatattaatgaccggagggtgta 3384218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3384319 - 3384368
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    ||||||||||||||||||| ||||| ||||||||||||| |||||| ||||    
T  3384319 aatgtatctaaaaagtgaa-tttttatttatattagtgaccggaggatgta 3384368  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4060267 - 4060316
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    |||||||||||||||| | ||||||| |||||||||||| |||||||||||    
T  4060267 aatgtatctaaaaagt-agatttttgcttatattagtgaccggagggtgta 4060316  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8257987 - 8257938
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    ||||||||||||||||||| |||||| ||||||| |||| |||||||||||    
T  8257987 aatgtatctaaaaagtgaa-tttttgcttatatttgtgaccggagggtgta 8257938  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 32796842 - 32796887
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggaggg 47  Q
    |||| |||||||||||||| |||||||||||| ||||||||||||||    
T  32796842 aatgaatctaaaaagtgaa-tttttgtttataatagtgatcggaggg 32796887  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35156309 - 35156260
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    |||| ||||||||| | |||||||||||||||||||||| |||||||||||    
T  35156309 aatgaatctaaaaa-taaaatttttgtttatattagtgaccggagggtgta 35156260  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 13043805 - 13043857
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtatat 54  Q
    |||| ||||||||| | ||| ||||| |||||||||||||||||||||||||||    
T  13043805 aatgaatctaaaaa-tcaaacttttgcttatattagtgatcggagggtgtatat 13043857  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 29302108 - 29302056
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtatat 54  Q
    |||| ||||||||| | ||||||||| |||||||||||| ||||||||||||||    
T  29302108 aatgaatctaaaaa-tcaaatttttgcttatattagtgaccggagggtgtatat 29302056  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 29302161 - 29302213
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtatat 54  Q
    |||| ||||||||| | ||||||||| |||||||||||| ||||||||||||||    
T  29302161 aatgaatctaaaaa-tcaaatttttgcttatattagtgaccggagggtgtatat 29302213  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 5574206 - 5574258
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtatat 54  Q
    |||||||||||||||| | ||||||| |||||||||||| ||||||||||||||    
T  5574206 aatgtatctaaaaagt-agatttttgcttatattagtgaccggagggtgtatat 5574258  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 20057211 - 20057256
Alignment:
Q  11 aaaagtgaaatttttgtttatattagtgatcggagggtgtatatgc 56  Q
    |||||| ||||||||| |||||||| ||| ||||||||||||||||    
T  20057211 aaaagtcaaatttttgcttatattaatgaccggagggtgtatatgc 20057256  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34248511 - 34248563
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtatat 54  Q
    ||||||||||||||||| | |||||| |||||||||||| | ||||||||||||    
T  34248511 aatgtatctaaaaagtgga-tttttgcttatattagtgaccagagggtgtatat 34248563  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 38594388 - 38594336
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtatat 54  Q
    |||||||||||| ||| | ||||||| |||||||||||| ||||||||||||||    
T  38594388 aatgtatctaaagagt-agatttttgcttatattagtgaccggagggtgtatat 38594336  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 38597984 - 38597932
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtatat 54  Q
    |||||||||||| ||| | ||||||| |||||||||||| ||||||||||||||    
T  38597984 aatgtatctaaagagt-agatttttgcttatattagtgaccggagggtgtatat 38597932  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7837129 - 7837078
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtata 53  Q
    |||||||||||||| ||| |||||||||||||||||||| || | ||||||||    
T  7837129 aatgtatctaaaaa-tgagatttttgtttatattagtgaacgtaaggtgtata 7837078  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 17773597 - 17773647
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    |||||||||||||||| | ||||||| |||||||||||| ||||||||||||    
T  17773597 aatgtatctaaaaagt-agatttttgcttatattagtgaccggagggtgtat 17773647  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 21506507 - 21506457
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    ||||||||||||||||| | |||||| |||||||||||| ||||||||||||    
T  21506507 aatgtatctaaaaagtgga-tttttgcttatattagtgaccggagggtgtat 21506457  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 21998083 - 21998033
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    |||||||||||||| || | |||||| |||||||||||||||||||||||||    
T  21998083 aatgtatctaaaaaatgta-tttttgcttatattagtgatcggagggtgtat 21998033  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 30397769 - 30397719
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtat 52  Q
    ||||||||||||| ||| | ||||||||||||||||||| ||||||||||||    
T  30397769 aatgtatctaaaatgtgga-tttttgtttatattagtgaccggagggtgtat 30397719  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28577645 - 28577593
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtatat 54  Q
    |||||||||||||| |||| |||||| |||||||||||| | ||||||||||||    
T  28577645 aatgtatctaaaaaatgaa-tttttgcttatattagtgacctgagggtgtatat 28577593  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 31536355 - 31536304
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtata 53  Q
    ||||||||||||||||  | |||||| |||||||||||| |||||||||||||    
T  31536355 aatgtatctaaaaagttga-tttttgcttatattagtgaccggagggtgtata 31536304  T

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Target: scaffold0536 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4046 - 4095
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    |||||||||||||||| ||||||||| |||||||||||| | |||||||||    
T  4046 aatgtatctaaaaagt-aaatttttgcttatattagtgaccagagggtgta 4095  T

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Target: scaffold0047 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 61258 - 61307
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    ||||||||||||| ||| | ||||||||||||||||||| |||||||||||    
T  61258 aatgtatctaaaatgtgga-tttttgtttatattagtgaccggagggtgta 61307  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 54484 - 54533
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgta 51  Q
    |||||||||||| |||||| |||||| ||||||||||||||||| ||||||    
T  54484 aatgtatctaaagagtgaa-tttttgcttatattagtgatcggatggtgta 54533  T

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Target: scaffold0039; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 54432 - 54381
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtata 53  Q
    |||||||||||||||| | ||||||| |||||||||| | |||||||||||||    
T  54432 aatgtatctaaaaagt-agatttttgcttatattagtaaccggagggtgtata 54381  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17262 - 17315
Alignment:
Q  1 aatgtatctaaaaagtgaaatttttgtttatattagtgatcggagggtgtatat 54  Q
    ||||||| ||||||||||| |||||  |||||||||||||||||| || |||||    
T  17262 aatgtatttaaaaagtgaatttttttcttatattagtgatcggagagtatatat 17315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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