View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3548_low_6 (Length: 203)
Name: NF3548_low_6
Description: NF3548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3548_low_6 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 25809052 - 25809166
Alignment:
| Q |
1 |
ccacttctaacccccatctctctcatacccagacccccatctcattgaacttcacttctcacaacccattgaacccatctctcatctcattacaagcatg |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25809052 |
ccacttctaacccc-atctctctcatacccagacccccatctcattgaactccacttctcacaacccattgaacccatctctcatctcattacaagcatg |
25809150 |
T |
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| Q |
101 |
cacccacacaggtata |
116 |
Q |
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|||||||||||||||| |
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| T |
25809151 |
cacccacacaggtata |
25809166 |
T |
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Target: scaffold0011 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 135716 - 135830
Alignment:
| Q |
1 |
ccacttctaacccccatctctctcatacccagacccccatctcattgaacttcacttctcacaacccattgaacccatctctcatctcattacaagcatg |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
135716 |
ccacttctaacccc-atctctctcatacccagacccccatctaattaaactccacttctcacaacccattgaacccatctctcatctcattacaagcatg |
135814 |
T |
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| Q |
101 |
cacccacacaggtata |
116 |
Q |
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|||||||||||||||| |
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| T |
135815 |
cacccacacaggtata |
135830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 23068363 - 23068249
Alignment:
| Q |
1 |
ccacttctaacccccatctctctcatacccagacccccatctcattgaacttcacttctcacaacccattgaacccatctctcatctcattacaagcatg |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23068363 |
ccacttctaacccc-atctctctcatacccagacccccatctaattaaactccacttctcacaacccattgaacccatctctcatctcattacaagcatg |
23068265 |
T |
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| Q |
101 |
cacccacacaggtata |
116 |
Q |
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|||||||||||||||| |
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| T |
23068264 |
cacccacacaggtata |
23068249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 20746369 - 20746447
Alignment:
| Q |
39 |
atctcattgaacttcacttctcacaacccattgaa-cccatctctcatctcattacaagcatgcacccacacaggtata |
116 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||||||| |
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| T |
20746369 |
atctcattgaactccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacacaggtata |
20746447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 26909178 - 26909101
Alignment:
| Q |
40 |
tctcattgaacttcacttctcacaacccattgaa-cccatctctcatctcattacaagcatgcacccacacaggtata |
116 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||||||| |
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| T |
26909178 |
tctcattgaactccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacacaggtata |
26909101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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