View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3549_high_1 (Length: 773)
Name: NF3549_high_1
Description: NF3549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3549_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 5 - 376
Target Start/End: Complemental strand, 27637802 - 27637431
Alignment:
| Q |
5 |
gaggaggagcagagagtaaggatgttggtggaaaatgacgcggaatcaagttgtggtgaaaaggaagaagtcagagctgaaaagcgtgtaagacgtgaaa |
104 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27637802 |
gaggagaagaagagagtaaggatgttggtggaaaatgacgcggaatcaagttgtggtgaaaaggaagaagtcagagctgaaaagcgtgtaagacgtgaaa |
27637703 |
T |
|
| Q |
105 |
acaatgtgttttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcatctctcttcatgcaaagcatgtaatgctttactcca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27637702 |
acaatgtgttttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcatctctcttcatgcaaagcatgtaatgctttactcca |
27637603 |
T |
|
| Q |
205 |
aacttgtccaatttgtggaatggcaaagaagggtattattgagattcagaattcgatttaaaagtgatattattttcaaaactgttattacaatagatca |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | |||||| |||||||||||||| ||| |
|
|
| T |
27637602 |
aacttgtccaatttgtggaatggcaaagaagggtattatcgagattcagaattcgatttaaaattgatattactgtcaaaaatgttattacaatagctca |
27637503 |
T |
|
| Q |
305 |
tctatgctatgatgattatcaatatgatatttatgagtttaatttagtttcatggtgtttcatttattttgt |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27637502 |
tctatgctatgatgattatcaatatgatatttatgagtttaatttagtttcatgatgtttcatttattttgt |
27637431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 374
Target Start/End: Complemental strand, 37353995 - 37353626
Alignment:
| Q |
5 |
gaggaggagcagagagtaaggatgttggtggaaaatgacgcggaatcaagttgtggtgaaaaggaagaagtcagagctgaaaagcgtgtaagacgtgaaa |
104 |
Q |
| |
|
|||||| || ||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||| |
|
|
| T |
37353995 |
gaggagaaggagagagtaacgatgttggtggaaaatgatgcggaatcaagttgtggagaaaaggaagaagtaagagctcaaaagcatgtaagacgtgaaa |
37353896 |
T |
|
| Q |
105 |
acaatgtgttttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcatctctcttcatgcaaagcatgtaatgctttactcca |
204 |
Q |
| |
|
| ||| ||||||||||||||| ||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37353895 |
agaatttgttttgttcaaagtataagacacacactcttggtgtcttagttcttccatgtaggcatctctcttcatgcaaagcatgtaatgctttactcca |
37353796 |
T |
|
| Q |
205 |
aacttgtccaatttgtggaatggcaaagaagggtattattgagattcagaattcgatttaaaagtgatattattttcaaaactgttattacaatagatca |
304 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||| |||| ||||||| | | |||||| | |||||| ||| ||||| | | | |
|
|
| T |
37353795 |
aacttgtccaatctgtggaatggcaaagaagggtattatcgagattcaaaatttgatttaagattaatattactgtcaaaaaggttggtacaacaactaa |
37353696 |
T |
|
| Q |
305 |
tctatgctatgatgattatcaatatgatatttatgagtttaatttagtttcatggtgtttcatttatttt |
374 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| |
|
|
| T |
37353695 |
gctatactatgatgattatcaatatgatatttatgagtttaatttagtttcatgttgttacttttatttt |
37353626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 374
Target Start/End: Complemental strand, 37365969 - 37365600
Alignment:
| Q |
5 |
gaggaggagcagagagtaaggatgttggtggaaaatgacgcggaatcaagttgtggtgaaaaggaagaagtcagagctgaaaagcgtgtaagacgtgaaa |
104 |
Q |
| |
|
|||||| || ||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||| |
|
|
| T |
37365969 |
gaggagaaggagagagtaacgatgttggtggaaaatgatgcggaatcaagttgtggagaaaaggaagaagtaagagctcaaaagcatgtaagacgtgaaa |
37365870 |
T |
|
| Q |
105 |
acaatgtgttttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcatctctcttcatgcaaagcatgtaatgctttactcca |
204 |
Q |
| |
|
| ||| ||||||||||||||| ||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37365869 |
agaatttgttttgttcaaagtataagacacacactcttggtgtcttagttcttccatgtaggcatctctcttcatgcaaagcatgtaatgctttactcca |
37365770 |
T |
|
| Q |
205 |
aacttgtccaatttgtggaatggcaaagaagggtattattgagattcagaattcgatttaaaagtgatattattttcaaaactgttattacaatagatca |
304 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||| |||| ||||||| | | |||||| | |||||| ||| ||||| | | | |
|
|
| T |
37365769 |
aacttgtccaatctgtggaatggcaaagaagggtattatcgagattcaaaatttgatttaagattaatattactgtcaaaaaggttggtacaacaactaa |
37365670 |
T |
|
| Q |
305 |
tctatgctatgatgattatcaatatgatatttatgagtttaatttagtttcatggtgtttcatttatttt |
374 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| |
|
|
| T |
37365669 |
gctatactatgatgattatcaatatgatatttatgagtttaatttagtttcatgttgttacttttatttt |
37365600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 82 - 263
Target Start/End: Original strand, 12292496 - 12292680
Alignment:
| Q |
82 |
tgaaaagcgtgtaagacgtgaaaacaatg---tgttttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcatctctcttca |
178 |
Q |
| |
|
|||||||||||| ||||||| ||||||| |||||||| |||||||||| |||||| | | |||||||||| | |||||||||||||| |||||| |
|
|
| T |
12292496 |
tgaaaagcgtgtcagacgtggaaacaatactatgttttgtccaaagtgtaacacaaactcctcagatgtcttatttataccatgtaggcatctttcttca |
12292595 |
T |
|
| Q |
179 |
tgcaaagcatgtaatgctttactccaaacttgtccaatttgtggaatggcaaagaagggtattattgagattcagaattcgattt |
263 |
Q |
| |
|
|||||||||||| | ||||||||| || | |||||||| ||||||||| |||||||||| |||||||||||||||||| ||||| |
|
|
| T |
12292596 |
tgcaaagcatgtgaagctttactcgaagcctgtccaatgtgtggaatgaaaaagaagggtgttattgagattcagaatttgattt |
12292680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 33 - 252
Target Start/End: Original strand, 12242707 - 12242929
Alignment:
| Q |
33 |
tggaaaatgacgcggaatcaagttgtggtgaaaaggaagaagtcagagctgaaaagcgtgtaagacgtgaaaacaatgt---gttttgttcaaagtgtaa |
129 |
Q |
| |
|
|||||||||| || | ||| |||| |||||||| || || || ||| |||||| ||||| ||||||| ||||||| | ||||||| |||| ||||| |
|
|
| T |
12242707 |
tggaaaatgatgcaaactcatgttgcggtgaaaatgatgatgtaagaattgaaaaacgtgttagacgtggaaacaatattatgttttgtccaaaatgtaa |
12242806 |
T |
|
| Q |
130 |
gacaaacactcttggtgtcttatttctgccatgtaggcatctctcttcatgcaaagcatgtaatgctttactccaaacttgtccaatttgtggaatggca |
229 |
Q |
| |
|
|||| | || | ||||||||||||||||||||| ||||| |||||||||||||| ||| | |||| |||| || |||||||||| |||||||||| | |
|
|
| T |
12242807 |
cacaagctcttcggatgtcttatttctgccatgtagacatctttcttcatgcaaagcgtgtgaagcttcactcaaagcttgtccaatctgtggaatggaa |
12242906 |
T |
|
| Q |
230 |
aagaagggtattattgagattca |
252 |
Q |
| |
|
||||| ||| ||||||| ||||| |
|
|
| T |
12242907 |
aagaatggtgttattgaaattca |
12242929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 388 - 743
Target Start/End: Complemental strand, 27514589 - 27514236
Alignment:
| Q |
388 |
tatcataatattataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaaatccatcattttgaactgcagttcaccgggcgggaaaaa |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |
|
|
| T |
27514589 |
tatcataatattataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaaatccatcattttcaactgcagttaatcgggcgggaaaaa |
27514490 |
T |
|
| Q |
488 |
atttatttatgaatttttgggacaaaattacgttgatacccttatgttgtaaaacatgcatgt-accatacattgctcgccatgttggaggatggaaatt |
586 |
Q |
| |
|
|| ||| |||| ||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27514489 |
tttaattaatgagtttttgggacaaaattacgtttatacccttatgttgtaaaacttgcatgtaaccatacattgctcgccatgttggagaatggaaatt |
27514390 |
T |
|
| Q |
587 |
tcaaacctggtgcatcacgttgtttatgctcagaggtgatgatgataactccacattggacggtgcacacacactgcacaagagg-tgaccaattgatgc |
685 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| |
|
|
| T |
27514389 |
tcaaacctgctgcatcacgttgtttatgctcaggggtcatgatgataactccacattggacggtg----cacactgcacaagaggttgaccaattgctgc |
27514294 |
T |
|
| Q |
686 |
aagcttctcttttcttcctttccttctatacaagagaaacaatcaccaccaacataaa |
743 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27514293 |
aagcttctcttttcttcctttccttctatacaagagaaacaatcatcaccaacataaa |
27514236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 453 - 757
Target Start/End: Original strand, 39209354 - 39209654
Alignment:
| Q |
453 |
atcattttgaactgcagttcaccgggcgggaaaaaatttatttatgaatttttgggacaaaattacgttgatacccttatgttgtaaaacatgcatgtac |
552 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39209354 |
atcatttttaactgcagttcgccgggcgggaaaaatttaatttatgaatttttgggacaaaattacgttggtacccttatgttgtaaaacatgcatgtac |
39209453 |
T |
|
| Q |
553 |
catacattgctcgccatgttggaggatggaaatttcaaacctggtgcatcacgttgtttatgctcagaggtgatgatgataactccacattggacggtgc |
652 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39209454 |
catacattgctcgcaatgttggaggatggaaatttcaaacctggtgcatcacgttgtttatgctcataggtgatgatgataactccacattggacggtg- |
39209552 |
T |
|
| Q |
653 |
acacacactgcacaagaggtgaccaattgatgcaagcttctcttttcttcctttccttctatacaagagaaacaatcaccaccaacataaaggtgtcttc |
752 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39209553 |
---catactgcacaagaggtgaccaattgatgcaagcttctcttttcttcctttccttctatacaagagaaacaatcaccaccaacataaaggtgtcttc |
39209649 |
T |
|
| Q |
753 |
tccct |
757 |
Q |
| |
|
||||| |
|
|
| T |
39209650 |
tccct |
39209654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 7e-48; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 15 - 263
Target Start/End: Complemental strand, 34698036 - 34697785
Alignment:
| Q |
15 |
agagagtaaggatgttggtggaaaatgacgcggaatcaagttgtggtgaaaaggaagaagtcagagctgaaaagcgtgtaagacgtgaaaacaatgtg-- |
112 |
Q |
| |
|
|||||| ||||||| | ||| |||||||||||||||| |||| ||||||| ||||||| |||||||||||||| | ||| | || ||||| || |
|
|
| T |
34698036 |
agagagcaaggatggttgtgctaaatgacgcggaatcatgttgcggtgaaagtgaagaagcaagagctgaaaagcgcatgagaagcgacgacaatttgaa |
34697937 |
T |
|
| Q |
113 |
-ttttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcatctctcttcatgcaaagcatgtaatgctttactccaaacttgt |
211 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| |||| ||||||| |||| | |||||||||||||||||| |
|
|
| T |
34697936 |
gttttgttcaaagtgtaagacaaactttgttggtgtcttatttcttccatgtaggcatctatctttatgcaaacaatgtgaagctttactccaaacttgt |
34697837 |
T |
|
| Q |
212 |
ccaatttgtggaatggcaaagaagggtattattgagattcagaattcgattt |
263 |
Q |
| |
|
||||| ||||||||||||||||||| | |||||||||| |||| ||| |||| |
|
|
| T |
34697836 |
ccaatatgtggaatggcaaagaaggatgttattgagatccagagttcaattt |
34697785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 15 - 263
Target Start/End: Complemental strand, 34720448 - 34720197
Alignment:
| Q |
15 |
agagagtaaggatgttggtggaaaatgacgcggaatcaagttgtggtgaaaaggaagaagtcagagctgaaaagcgtgtaagacgtgaaaacaatgtg-- |
112 |
Q |
| |
|
|||||| ||||||| | ||| |||||||||||||||| |||| ||||||| ||||||| |||||||||||||| | ||| | || ||||| || |
|
|
| T |
34720448 |
agagagcaaggatggttgtgctaaatgacgcggaatcatgttgcggtgaaagtgaagaagcaagagctgaaaagcgcatgagaagcgacgacaatttgaa |
34720349 |
T |
|
| Q |
113 |
-ttttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcatctctcttcatgcaaagcatgtaatgctttactccaaacttgt |
211 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| |||| ||||||| |||| | |||||||||||||||||| |
|
|
| T |
34720348 |
gttttgttcaaagtgtaagacaaactttgttggtgtcttatttcttccatgtaggcatctatctttatgcaaacaatgtgaagctttactccaaacttgt |
34720249 |
T |
|
| Q |
212 |
ccaatttgtggaatggcaaagaagggtattattgagattcagaattcgattt |
263 |
Q |
| |
|
||||| ||||||||||||||||||| | |||||||||| |||| ||| |||| |
|
|
| T |
34720248 |
ccaatatgtggaatggcaaagaaggatgttattgagatccagagttcaattt |
34720197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 27910007 - 27909926
Alignment:
| Q |
173 |
tcttcatgcaaagcatgtaatgctttactccaaacttgtccaatttgtggaatggcaaagaagggtattattgagattcaga |
254 |
Q |
| |
|
||||||||||||| ||| | ||||||||| || ||||||||| |||||||||| |||||||| | ||||||||||||||| |
|
|
| T |
27910007 |
tcttcatgcaaagtgtgtgaagctttactcgaagtttgtccaatatgtggaatggaaaagaaggatgttattgagattcaga |
27909926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 405 - 532
Target Start/End: Original strand, 23016965 - 23017092
Alignment:
| Q |
405 |
tggaacacaaacctgcaagtttgccctaatttaatcctttgaaaatccatcattttgaactgcagttcaccgggcgggaaaaaatttatttatgaatttt |
504 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| || ||| |||| |||| |
|
|
| T |
23016965 |
tggaacacaaacctgcaagttttccctaatttaatcctttgaaaatccatcattttcaactgcagttcatcgggcgggaaaaatttaattaatgagtttt |
23017064 |
T |
|
| Q |
505 |
tgggacaaaattacgttgatacccttat |
532 |
Q |
| |
|
|||||||||||||| || |||||||||| |
|
|
| T |
23017065 |
tgggacaaaattacatttatacccttat |
23017092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 389 - 448
Target Start/End: Complemental strand, 36407074 - 36407015
Alignment:
| Q |
389 |
atcataatattataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaa |
448 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| ||||||||||||| |||||||||| |
|
|
| T |
36407074 |
atcataatattataaatggaacaccaagctgcaaatttgccctaatttgttcctttgaaa |
36407015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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