View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3549_high_4 (Length: 377)
Name: NF3549_high_4
Description: NF3549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3549_high_4 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 24 - 377
Target Start/End: Complemental strand, 274554 - 274201
Alignment:
| Q |
24 |
atctcttgtattgaatagtctccataaaccaccaaagaagcaaatagtgttcactatgagtaacacaaccattggagacatgtacaaagctgcaccttga |
123 |
Q |
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| T |
274554 |
atctcttgtattgaatagtctccataaaccaccaaagaagcaaatagtgttcactatgagtaacacaaccattggagacatgtacaaagctgcaccttga |
274455 |
T |
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| Q |
124 |
aaatcaaatctaccttgttcatatttcttgattttctctttatctgtgtcaattgctttgtttgacaagttgaatttcttcttgttcaatccaaaccatt |
223 |
Q |
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| T |
274454 |
aaatcaaatctaccttgttcatatttcttgattttctctttatctgtgtcaattgctttgtttgacaagttgaatttcttcttgttcaatccaaaccatt |
274355 |
T |
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| Q |
224 |
tcttaactgcctctgtcattgcaaacaaactagtaactgatttcagaatccaaattctttgttcatcccaccacattgacactgagccatcaccagaaat |
323 |
Q |
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| T |
274354 |
tcttaactgcctctgtcattgcaaacaaactggtaactgatttcagaatccaaattctttgttcatcccaccacattgacactgagccatcaccagaaat |
274255 |
T |
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| Q |
324 |
gacctctatcaaatgttgaatttgtgtggcaacatataagaatgcaaacactgc |
377 |
Q |
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| T |
274254 |
gacctctatcaaatgttgaatttgtgtggcaacatataagaatgcaaacactgc |
274201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 375
Target Start/End: Original strand, 17577869 - 17578206
Alignment:
| Q |
32 |
tattgaatagtctccataaaccaccaaagaagcaaatagtgttcactatgagtaacacaaccattggagacatgtacaaagctgcaccttgaaaatcaaa |
131 |
Q |
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| T |
17577869 |
tattgagtagtctccataaaccaccaaagaagcaaacaatgtttattatgagcaacacaatcaatggtgccatcaacaacgttgcaccttcaaaattaaa |
17577968 |
T |
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| Q |
132 |
tctaccttgttcatatttcttgattttctctttatctgtgtcaattgctttgtttgacaagttgaatttcttcttgttcaatccaaaccatttcttaact |
231 |
Q |
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| T |
17577969 |
tttaccttgctcatattgcttta------ccttatctttgtcaactgctttgtttgataaagtgaattttcccttattcaacccaaaccatttttttgtt |
17578062 |
T |
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| Q |
232 |
gcctctgtcattgcaaacaaactagtaactgatttcagaatccaaattctttgttcatcccaccacattgacactgagccatcaccagaaatgacctcta |
331 |
Q |
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| T |
17578063 |
gcttctataattgcaaaaaaacatccaattgattttacaatccaacttctttgttcatcccaccaaattctagaggagccaccacttgaaattacctcaa |
17578162 |
T |
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| Q |
332 |
tcaaatgttgaatttgtgtggcaacatataagaatgcaaacact |
375 |
Q |
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| T |
17578163 |
tataatgttgaatttgagtggatacatataataatgtaaacact |
17578206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 16381280 - 16381345
Alignment:
| Q |
33 |
attgaatagtctccataaaccaccaaagaagcaaatagtgttcactatgagtaacacaaccattgg |
98 |
Q |
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| T |
16381280 |
attgagtagtttccataaaccaccaaagaagcaagtaatatttagtatgagtaacacaaccattgg |
16381345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 67
Target Start/End: Complemental strand, 18253 - 18225
Alignment:
| Q |
39 |
tagtctccataaaccaccaaagaagcaaa |
67 |
Q |
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| T |
18253 |
tagtctccataaaccaccaaagaagcaaa |
18225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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