View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3549_high_8 (Length: 237)
Name: NF3549_high_8
Description: NF3549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3549_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 256919 - 257130
Alignment:
| Q |
9 |
gtgagaagaaaaaatacatagcagaaaaataaataagacatctattgagtctttgtaatgaaggataaaaggaaaaagaacaaaataagcttgagtttca |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
256919 |
gtgaaaagaaaaaatacatagcagaaaaataaataagacatctattgagtctttgtaatgaaggataaaaggaaaaagaacaaaataagcttgagtatca |
257018 |
T |
|
| Q |
109 |
ctttctcataaaagaaacataaaaattaatatccttaagaattataaattctgccattcctctaaaaccataggcttataatgctcacagtaaagcatct |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
257019 |
atttctcataaaagaaacataaaaattaatatccttaagaattataaattctgccattcctctaaaaccataggcttataatgctcacagtaaagcatct |
257118 |
T |
|
| Q |
209 |
ttgccctctttg |
220 |
Q |
| |
|
|||||||||||| |
|
|
| T |
257119 |
ttgccctctttg |
257130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University