View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3549_high_9 (Length: 221)
Name: NF3549_high_9
Description: NF3549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3549_high_9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 7604990 - 7605082
Alignment:
| Q |
131 |
aattcaatctaaagttattaaactcatcaatacaaagtaag--nnnnnnnnnnngagggaacaatacaaagtaagttaaaacaagtttataat |
221 |
Q |
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| T |
7604990 |
aattcaatctaaagttattaaactcatcaatacaaagtaagtttttttttttttgagggaacaatacaaagtaagttaaaacaagtttataat |
7605082 |
T |
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Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 7604830 - 7604877
Alignment:
| Q |
1 |
agttctttgtgtgattgtcaagttgctattcctatcggagaccaggtg |
48 |
Q |
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| T |
7604830 |
agttctttgtgtgattgtcaagttgctattcctatcggagaccaggtg |
7604877 |
T |
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