View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3549_low_2 (Length: 728)
Name: NF3549_low_2
Description: NF3549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3549_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 546; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 13 - 712
Target Start/End: Original strand, 7420737 - 7421426
Alignment:
| Q |
13 |
aatatcactaagaacaagcttaacaaagatgcccaaataaaacatcaagaaatacaacaagactaaaatacaccaacaaagccaatgaaagttggttaag |
112 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7420737 |
aatatcagtaagaacaagcttaacaaagctgcccaaataaaacaccaagaaatacaacaagactaaaatacaccaacaaagccaatgaaagttggttaag |
7420836 |
T |
|
| Q |
113 |
ttggtaataattaagttgactcattcataagtaactttaaagctcgtcgagctttaaggtctgacttgactctaataagttgaggagctcaactcacata |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
7420837 |
ttggtaataattaagttgactcattcataagtaactctaaagcttgtcgagctttaaggtttgacttgactctaataagttgaggagcccaactcacata |
7420936 |
T |
|
| Q |
213 |
aagtcaactttttattaaaacaaatacaccaacaaaagaacaagaacgctttcataggaaagatataaaacaacaaaactnnnnnnnncacaca-atgat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| |
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| T |
7420937 |
aagtcaactttttattaaaacaaatacaccaacaaaagaacaagaacgctttcataggaaagatataaaacaacaaaact-aaaaagacacaaagatgat |
7421035 |
T |
|
| Q |
312 |
tctccaaacatggcaaatccacaatgactaaatgcacatccttccattctaacagcaacagtaacaccaacaatacttgcaaagtataatcaatatgctt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7421036 |
tctccaaacatggcaaatccacaatgactaaatgcacatccttccattc------------taacaccaacaatacttgcaaagtataatcaatatgctt |
7421123 |
T |
|
| Q |
412 |
ctttgccacctgtcaaagaaatttaaaggttaaagagagaaaaattgaattgtgcgtggaatcataagtgtaagaatattttgaaataaaattataagtt |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7421124 |
ctttgccacctgtcaaagaaatttaaaggttaaagagagaaaaattgaattgtgcgtggaatcataagtgtaagaatattttgaaataaaattataagtt |
7421223 |
T |
|
| Q |
512 |
tagaagtaactaaattggttg--nnnnnnnncttaactgctaagacagaagcaaatatgtgaaacacacttcggaagctgaggtccggtacaaataaatg |
609 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7421224 |
tagaagtaactaaattggttgaaaaaaaaaacttaactgctaagacagaagcaaatatgtgaaacacacttcggaatctgaggtccggtacaaataaatg |
7421323 |
T |
|
| Q |
610 |
ggcagtcttcatctctattacatcgagttccatttacgacataaagtaggaaaagaaatatgatcataatataaacaaatttgaaaattgcagccatgtt |
709 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
7421324 |
ggcagtcttcatctctattacatcgagttccatttacgacataaagtaggaaaagaaatatgatcataatataaacaaatttgagaattacagccatgtt |
7421423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 887425 - 887512
Alignment:
| Q |
16 |
atcactaagaacaagcttaacaaagatgcccaaataaaa--catcaagaaatacaacaagactaaaatacaccaacaaagccaatgaa |
101 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
887425 |
atcagtaagaacaagcttaacaaagctgcccaaataaaaaacaccaagaaatacaacaagactaaaatacaccaacagagccaatgaa |
887512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 887546 - 887654
Alignment:
| Q |
168 |
aaggtctgacttgactctaataagttgaggagctcaactcacataaagtcaactttttattaaaacaaatacaccaacaaaagaacaagaacgctttcat |
267 |
Q |
| |
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|||||||||||| |||||||| ||| |||||||||||||| |||||| | ||||||||||| ||||| |||||||||||||| |||| |||||||| |
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| T |
887546 |
aaggtctgacttaactctaatgagtcgaggagctcaactcgcataaa-----cgttttattaaaa-aaataaaccaacaaaagaaccagaaagctttcat |
887639 |
T |
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| Q |
268 |
aggaaagatataaaa |
282 |
Q |
| |
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|||||||||| |||| |
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| T |
887640 |
aggaaagataaaaaa |
887654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 648 - 710
Target Start/End: Complemental strand, 1157563 - 1157501
Alignment:
| Q |
648 |
acataaagtaggaaaagaaatatgatcataatataaacaaatttgaaaattgcagccatgttt |
710 |
Q |
| |
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|||||||||||||||||| ||| ||||| | |||||||||| || | ||||||| |||||||| |
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| T |
1157563 |
acataaagtaggaaaagatataggatcaaagtataaacaaactttagaattgcatccatgttt |
1157501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 657 - 713
Target Start/End: Complemental strand, 8116901 - 8116845
Alignment:
| Q |
657 |
aggaaaagaaatatgatcataatataaacaaatttgaaaattgcagccatgtttctg |
713 |
Q |
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||||||| | ||||||||||||||||| ||||||||||||||| || |||||||||| |
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| T |
8116901 |
aggaaaacacatatgatcataatataagcaaatttgaaaattgtagtcatgtttctg |
8116845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 706
Target Start/End: Complemental strand, 21205468 - 21205421
Alignment:
| Q |
659 |
gaaaagaaatatgatcataatataaacaaatttgaaaattgcagccat |
706 |
Q |
| |
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||||||||| || |||||||||||||||||||||| |||| ||||||| |
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| T |
21205468 |
gaaaagaaaaataatcataatataaacaaatttgagaatttcagccat |
21205421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 660 - 712
Target Start/End: Complemental strand, 26584404 - 26584352
Alignment:
| Q |
660 |
aaaagaaatatgatcataatataaacaaatttgaaaattgcagccatgtttct |
712 |
Q |
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|||||| |||||||||||||||||||||| || | |||||||||||| ||||| |
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| T |
26584404 |
aaaagatatatgatcataatataaacaaacttaagaattgcagccatatttct |
26584352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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