View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3549_low_3 (Length: 509)

Name: NF3549_low_3
Description: NF3549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3549_low_3
NF3549_low_3
[»] chr8 (2 HSPs)
chr8 (64-509)||(7605081-7605528)
chr8 (69-119)||(12883127-12883177)
[»] chr5 (7 HSPs)
chr5 (64-119)||(29429618-29429673)
chr5 (68-118)||(29429556-29429606)
chr5 (69-122)||(29855458-29855511)
chr5 (64-119)||(6818584-6818639)
chr5 (68-118)||(36187525-36187575)
chr5 (64-121)||(141317-141374)
chr5 (64-120)||(30784316-30784372)
[»] chr3 (8 HSPs)
chr3 (64-119)||(43271653-43271708)
chr3 (64-116)||(23071973-23072025)
chr3 (64-119)||(54362039-54362094)
chr3 (79-119)||(32737831-32737871)
chr3 (64-119)||(9762755-9762810)
chr3 (64-119)||(37311652-37311707)
chr3 (79-118)||(41666924-41666963)
chr3 (64-119)||(53683946-53684001)
[»] chr2 (4 HSPs)
chr2 (64-122)||(929031-929089)
chr2 (77-116)||(34806211-34806250)
chr2 (80-122)||(2788427-2788471)
chr2 (64-116)||(15215514-15215566)
[»] chr1 (6 HSPs)
chr1 (64-122)||(3150657-3150715)
chr1 (64-122)||(29867033-29867091)
chr1 (64-114)||(37316136-37316186)
chr1 (64-122)||(49044700-49044758)
chr1 (79-122)||(47206737-47206780)
chr1 (64-120)||(42728509-42728565)
[»] scaffold0121 (1 HSPs)
scaffold0121 (64-120)||(34012-34068)
[»] chr7 (6 HSPs)
chr7 (64-116)||(37708542-37708594)
chr7 (64-119)||(48723328-48723383)
chr7 (64-115)||(9658337-9658388)
chr7 (79-118)||(11698390-11698429)
chr7 (64-118)||(29724371-29724425)
chr7 (66-120)||(32854262-32854316)
[»] chr4 (9 HSPs)
chr4 (75-119)||(48809865-48809909)
chr4 (64-119)||(50685601-50685656)
chr4 (64-115)||(13529361-13529412)
chr4 (64-119)||(14112276-14112330)
chr4 (76-119)||(40227654-40227697)
chr4 (64-122)||(3527885-3527943)
chr4 (64-113)||(48546338-48546387)
chr4 (64-112)||(13902029-13902077)
chr4 (64-116)||(23241023-23241075)
[»] chr6 (1 HSPs)
chr6 (64-119)||(7509736-7509791)


Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 64 - 509
Target Start/End: Complemental strand, 7605528 - 7605081
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtgtctaagttaatatttccctaaaaaatactatagactta--cttt 161  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||  ||||    
T  7605528 aatttaaatgcatttatttcaacaaaatatttccacttttgactcattaatttgagtctaagttaacatttccctaaaaaatactatagacttatacttt 7605429  T
Q  162 tcaggtattatatagtagtagaaactatattctaatattaattatcaaaactgnnnnnnnnnnnnnnnnaaataatcatgcttgttaaaagcaaaataat 261  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||                |||| ||||||||||||||||||||||||||    
T  7605428 tcagttattatatagtagtagaaactatattctaatattaattatcaaaactgttttttattttattttaaatgatcatgcttgttaaaagcaaaataat 7605329  T
Q  262 aatacaagttgttaatcataannnnnnnnctttatcataaagaattcatatgatggaagatacaactgatgcaaagtcaccgagaaccaccaaattcgtt 361  Q
    |||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  7605328 aatacaagttgttaatcataattttttttctttatcataaagaattcatatgatggaatatacaacttatgcaaagtcaccgagaaccaccaaattcgtt 7605229  T
Q  362 aagattaacaatgaaatttactttccctaaaaaatattgaaatttacttaaatttcaagcgataatcctaactcatagttgatgcaagctaaagaatt-g 460  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  7605228 gagattaaaaatgaaatttactttccctaaaaaatattgaaatttacttaaatttcaagcgataatcctaactcatagttgatgcaagctaaagaattac 7605129  T
Q  461 tatcaacggaacataaggtctaaccattatatcaatttcggtagagaat 509  Q
    ||| ||| ||  || || | |||||||||||||||||||||| ||||||    
T  7605128 tataaac-gactatgagttataaccattatatcaatttcggtcgagaat 7605081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 12883127 - 12883177
Alignment:
Q  69 aaatgtatttattacaacaaaatattttcacttttgactcattaacttgtg 119  Q
    ||||| ||| ||||||||||| ||||||||||| | |||||||||||||||    
T  12883127 aaatgcattaattacaacaaattattttcacttataactcattaacttgtg 12883177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 29429673 - 29429618
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtg 119  Q
    |||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||    
T  29429673 aattcaaatgtattaattacaacaaaatatttccacttttgactctttaacttgtg 29429618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 29429606 - 29429556
Alignment:
Q  68 caaatgtatttattacaacaaaatattttcacttttgactcattaacttgt 118  Q
    |||||||||| ||||||||||||||||| |||||||||||| |||||||||    
T  29429606 caaatgtattaattacaacaaaatatttccacttttgactctttaacttgt 29429556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 29855458 - 29855511
Alignment:
Q  69 aaatgtatttattacaacaaaatattttcacttttgactcattaacttgtgtct 122  Q
    ||||| ||| |||||||||||||||||| || ||||||||||| ||||||||||    
T  29855458 aaatgcattaattacaacaaaatatttttacatttgactcatttacttgtgtct 29855511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 6818639 - 6818584
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtg 119  Q
    |||||||||  ||| ||||||||||| |||||||| |||| |||||||||||||||    
T  6818639 aattcaaatacattgattacaacaaattattttcatttttaactcattaacttgtg 6818584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 36187575 - 36187525
Alignment:
Q  68 caaatgtatttattacaacaaaatattttcacttttgactcattaacttgt 118  Q
    |||||| ||| |||||||||||||||||| |||||| | ||||||||||||    
T  36187575 caaatgcattaattacaacaaaatatttttacttttaattcattaacttgt 36187525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 141374 - 141317
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtgtc 121  Q
    |||||||||| ||| ||||||||||  ||||| |||||||  ||||||||||||||||    
T  141374 aattcaaatgcattaattacaacaatttatttccacttttagctcattaacttgtgtc 141317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 30784316 - 30784372
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtgt 120  Q
    |||||||||  ||| |||||||||||||||||| |||||| ||| | ||||||||||    
T  30784316 aattcaaatacattaattacaacaaaatatttttacttttaacttaataacttgtgt 30784372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 43271708 - 43271653
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtg 119  Q
    |||||||||| ||||||||||||| ||||||| ||||||||| |||||||||||||    
T  43271708 aattcaaatgcatttattacaacagaatatttccacttttgattcattaacttgtg 43271653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 23071973 - 23072025
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaactt 116  Q
    |||||||||| ||| ||||||| |||||||||||||||||| |||||||||||    
T  23071973 aattcaaatgcattaattacaataaaatattttcacttttggctcattaactt 23072025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 54362094 - 54362039
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtg 119  Q
    |||||||||| ||| |||||||| ||||||||  ||||||||||||||||||||||    
T  54362094 aattcaaatgcattgattacaaccaaatatttctacttttgactcattaacttgtg 54362039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 32737831 - 32737871
Alignment:
Q  79 attacaacaaaatattttcacttttgactcattaacttgtg 119  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  32737831 attacaacaaattattttcatttttgactcattaacttgtg 32737871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 9762755 - 9762810
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtg 119  Q
    |||||||||| ||| ||||||| |||||||||  |||||||||||||||| |||||    
T  9762755 aattcaaatgcattaattacaataaaatatttctacttttgactcattaatttgtg 9762810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 37311707 - 37311652
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtg 119  Q
    |||||||||| ||| ||||||||||| |||||  ||||||| ||||||||||||||    
T  37311707 aattcaaatgcattaattacaacaaattatttatacttttgtctcattaacttgtg 37311652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 41666963 - 41666924
Alignment:
Q  79 attacaacaaaatattttcacttttgactcattaacttgt 118  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  41666963 attacaataaaatatttttacttttgactcattaacttgt 41666924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 53684001 - 53683946
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtg 119  Q
    |||||||||  ||| |||| |||||| |||||||||||||| ||||||||||||||    
T  53684001 aattcaaatacattaattaaaacaaattattttcacttttggctcattaacttgtg 53683946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 929089 - 929031
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtgtct 122  Q
    |||||||||| ||| |||||||||||||||||  ||||||||||| |||||||||||||    
T  929089 aattcaaatgcattgattacaacaaaatatttctacttttgactctttaacttgtgtct 929031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 34806250 - 34806211
Alignment:
Q  77 ttattacaacaaaatattttcacttttgactcattaactt 116  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  34806250 ttattacaataaaatattttcatttttgactcattaactt 34806211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 2788471 - 2788427
Alignment:
Q  80 ttacaacaaaatattttcacttttgact--cattaacttgtgtct 122  Q
    |||||| |||||||||||||||||||||  |||||||||||||||    
T  2788471 ttacaataaaatattttcacttttgactcacattaacttgtgtct 2788427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 15215566 - 15215514
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaactt 116  Q
    |||||||||| ||| ||| |||||| ||||||  |||||||||||||||||||    
T  15215566 aattcaaatgcattaatttcaacaatatatttctacttttgactcattaactt 15215514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 3150715 - 3150657
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtgtct 122  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||  |||||||||||||    
T  3150715 aattcaaatgtattaattacaacaaattatttccacttttgacttgttaacttgtgtct 3150657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 29867033 - 29867091
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtgtct 122  Q
    ||||||||||||||||||||||||||||||||  |||||||| || ||||||| |||||    
T  29867033 aattcaaatgtatttattacaacaaaatatttctacttttgattcgttaacttatgtct 29867091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 37316186 - 37316136
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaac 114  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||||||||||    
T  37316186 aattcaaatatattaattacaacaaattattttcacttttgactcattaac 37316136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 49044758 - 49044700
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtgtct 122  Q
    |||||||||| ||| ||||||| |||||||||  ||||||||||||||||||| |||||    
T  49044758 aattcaaatgcattaattacaataaaatatttctacttttgactcattaacttatgtct 49044700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 47206780 - 47206737
Alignment:
Q  79 attacaacaaaatattttcacttttgactcattaacttgtgtct 122  Q
    ||||||||||| |||||| | |||||||||||||||||||||||    
T  47206780 attacaacaaagtatttttatttttgactcattaacttgtgtct 47206737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 42728509 - 42728565
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtgt 120  Q
    |||||||||| ||| | | ||| |||||||||||| |||||||||||||| ||||||    
T  42728509 aattcaaatgcattaaattcaataaaatattttcatttttgactcattaatttgtgt 42728565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 34068 - 34012
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtgt 120  Q
    |||||||||||||| |||||||  ||||||||| ||||||||| |||||||||||||    
T  34068 aattcaaatgtattaattacaatgaaatatttttacttttgacgcattaacttgtgt 34012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 37708542 - 37708594
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaactt 116  Q
    |||||||||| |||||||||||||||  ||||||||||||| |||||||||||    
T  37708542 aattcaaatgcatttattacaacaaatcattttcacttttggctcattaactt 37708594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 48723328 - 48723383
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtg 119  Q
    |||||||||| ||| ||||||||||||||||| ||||||  |||||||||||||||    
T  48723328 aattcaaatgcattcattacaacaaaatatttccactttaaactcattaacttgtg 48723383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 9658388 - 9658337
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaact 115  Q
    |||||||||| ||| |||||||||||| ||||  ||||||||||||||||||    
T  9658388 aattcaaatgcattaattacaacaaaaaatttatacttttgactcattaact 9658337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 11698429 - 11698390
Alignment:
Q  79 attacaacaaaatattttcacttttgactcattaacttgt 118  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  11698429 attacaacaaaatatttttaattttgactcattaacttgt 11698390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 29724371 - 29724425
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgt 118  Q
    |||||||||| ||||||||||||||| |||||  |||||||||| ||| ||||||    
T  29724371 aattcaaatgcatttattacaacaaattatttctacttttgacttatttacttgt 29724425  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 32854316 - 32854262
Alignment:
Q  66 ttcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtgt 120  Q
    |||||||| ||| |||| |||||| ||||| ||||||| ||||||||||||||||    
T  32854316 ttcaaatgcattgattagaacaaattatttccacttttaactcattaacttgtgt 32854262  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 48809909 - 48809865
Alignment:
Q  75 atttattacaacaaaatattttcacttttgactcattaacttgtg 119  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||    
T  48809909 atttattataacaaaatattttcactttagactcattaacttgtg 48809865  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 50685656 - 50685601
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtg 119  Q
    |||||||||  ||||||||||||||| ||||| |||||||| ||||||||||||||    
T  50685656 aattcaaatacatttattacaacaaattatttccacttttggctcattaacttgtg 50685601  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 13529412 - 13529361
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaact 115  Q
    |||||||||| ||| |||||||||||| ||||  ||||||||||||||||||    
T  13529412 aattcaaatgcattaattacaacaaaaaatttatacttttgactcattaact 13529361  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 14112276 - 14112330
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtg 119  Q
    |||||||||||||| |||||| ||||||||| | |||||| |||||||||||||||    
T  14112276 aattcaaatgtattgattacagcaaaatattat-acttttaactcattaacttgtg 14112330  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 40227654 - 40227697
Alignment:
Q  76 tttattacaacaaaatattttcacttttgactcattaacttgtg 119  Q
    |||||||||||||| ||||| |||||||| ||||||||||||||    
T  40227654 tttattacaacaaattatttccacttttgcctcattaacttgtg 40227697  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 3527943 - 3527885
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtgtct 122  Q
    |||||||||| ||| |||||||||||||||||  ||||| |||| ||| ||||||||||    
T  3527943 aattcaaatgcattgattacaacaaaatatttctactttggacttattgacttgtgtct 3527885  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 48546338 - 48546387
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaa 113  Q
    ||||||||||||||||||| |||| |||||||  |||||| |||||||||    
T  48546338 aattcaaatgtatttattataacacaatatttctacttttaactcattaa 48546387  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 13902077 - 13902029
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcatta 112  Q
    |||||||||| ||| |||||||| ||||||||  |||||||||||||||    
T  13902077 aattcaaatgcattgattacaaccaaatatttctacttttgactcatta 13902029  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 23241075 - 23241023
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaactt 116  Q
    |||||||||| ||| |||  ||||||||||||| |||||| ||||||||||||    
T  23241075 aattcaaatgcattaattgtaacaaaatatttttacttttaactcattaactt 23241023  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 7509736 - 7509791
Alignment:
Q  64 aattcaaatgtatttattacaacaaaatattttcacttttgactcattaacttgtg 119  Q
    |||||||||| ||| ||||||||| |||||||  ||||||||||||||||||||||    
T  7509736 aattcaaatgcattgattacaacacaatatttctacttttgactcattaacttgtg 7509791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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