View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3549_low_5 (Length: 346)
Name: NF3549_low_5
Description: NF3549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3549_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 31742214 - 31741904
Alignment:
| Q |
18 |
cagagaatttgacagaatcacagttcgaaatcacgatagttagttacacttggaagcttcaactaaatcacaacacacatgcattgagaagtgataatga |
117 |
Q |
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| T |
31742214 |
cagagaatttgacagaatcacagttcgaaatcacgatagtta----cactttgaagcttcaactaaatcacaacacacatgcattgagaagtgataatga |
31742119 |
T |
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| Q |
118 |
gtgattcaccggcaatccaaacatatactaacagaaatatactgataaaggattactataattgagtatgaatcttaaccagaaaaaagacagtgcagag |
217 |
Q |
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| T |
31742118 |
gtgattcaccggaaatccaaacatatactaacagaaatatactgataaagggttactataattgagtatgaatcttaaccagcaaaaagacagtgcagag |
31742019 |
T |
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| Q |
218 |
tacaaacctttccattttgtgtctttaaaccgcgcacgcaactggtacaattacaaggtaaccaaaacaagtcactgccggtatccaatgccaccaaaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31742018 |
tacaaacctttccattttgtgtctttaaaccgcgcacgcaactggtacaattacaaggtaaccaaaacaagtcactgccggtatccaatgccaccaaaaa |
31741919 |
T |
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| Q |
318 |
ccataaaggtggtgt |
332 |
Q |
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||||| ||||||||| |
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| T |
31741918 |
ccatagaggtggtgt |
31741904 |
T |
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