View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_high_11 (Length: 509)
Name: NF3550_high_11
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 493
Target Start/End: Original strand, 12182670 - 12183147
Alignment:
| Q |
10 |
atatgaacatagtttaaaagtgggcttcactatttttatcaacttttaataaaactagaatattaccaagtttcttgatcaaaaaagaatattacaaagt |
109 |
Q |
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| T |
12182670 |
atatgaacatagtttaaaagtgggcttcactatttttatcaacttttaataaaactagaatattac----------gatcaaaaaagaatattacaaagt |
12182759 |
T |
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| Q |
110 |
ttaatcaagcttttatacgggttaatttacaagtctagccaagaccttacatagggttaattccctaaatttagaaattgatccgtcctcg--------- |
200 |
Q |
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| T |
12182760 |
ttaatcaagcctttatacgggttaatttacaagtctagccaagaccttacatagggttaattccctaaatttagaaattgatccgtcctagttagcttag |
12182859 |
T |
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| Q |
201 |
-tcagctagtaagggtaatgcataatatatacaaggagaaggattcaaacctcggtcac--caccaaacaaagaaattgatccattattttaagaatatt |
297 |
Q |
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| T |
12182860 |
ctcagttggtaagggtaatatataatatatgcaaggtcctggattcaaacctcagccacaataaaaaaaaaagaaattgatccattattttaagaatatt |
12182959 |
T |
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| Q |
298 |
tttacgttttattattacccattgtgggctagcttgtgtttttattgnnnnnnnaagggaattttattattagccattactttaaagtgtatttactgtt |
397 |
Q |
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| T |
12182960 |
tttacgttttattattagccattgtgggctagcttgttttttt-----------aagggaattttattattagccattactttaaagtgtatttactgtt |
12183048 |
T |
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| Q |
398 |
atttacgc----nnnnnnngggtacaaattgttatatacacttttaactcaatgatatataattaatataacatattgacccaatcgcatgtaaagatac |
493 |
Q |
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| T |
12183049 |
atttatgcttctttttttttggtac-aattgttatatacacttttaactcaatgatatataattaatataacatattgacctaatcgcatgtaaagatac |
12183147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 12188534 - 12188605
Alignment:
| Q |
11 |
tatgaacatagtttaaaa-gtgggcttcactatttttatcaacttttaataaaactagaatattaccaagttt |
82 |
Q |
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| T |
12188534 |
tatgaacatggtttaaaaagtggg-ttcaatatttttattaacttttaataaaactagaatattaccaggttt |
12188605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 11913756 - 11913801
Alignment:
| Q |
216 |
aatgcataatatatacaaggagaaggattcaaacctcggtcaccac |
261 |
Q |
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| T |
11913756 |
aatgcataatatatacaaggttcgggattcaaacctcggtcaccac |
11913801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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