View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_high_12 (Length: 497)
Name: NF3550_high_12
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 17 - 469
Target Start/End: Original strand, 51109041 - 51109493
Alignment:
| Q |
17 |
cataacacctcacgctgtttaaaacaattggagaaacatttatgggtctagtattatggaaaagcgaatgcgaatatggcataacagtagggagagtttt |
116 |
Q |
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| T |
51109041 |
cataacacctcacgctgtttaaaacaattggagaaacatttatgggtctagtattatggaaaagcgaatgcgaatatggcataacagtagggagagtttt |
51109140 |
T |
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| Q |
117 |
aggtttgggaatagaatttgagaaagaagcatgaagcaggtgagtgtaacatctgcgaaattgaaatgtcctctcggtattcagcctaaagtttccgatt |
216 |
Q |
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| T |
51109141 |
aggttcgggaatagaatttgagaaagaagcatgaagcaggtgagtgtaacatctgcgaaattgaaatgtcctctcggtattcagcctaaagtttcagatt |
51109240 |
T |
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| Q |
217 |
cgatgcagaaatgacataacctcaacggttgaattaaccgtaactgaggtttggtgtttgtttattagttagttgtgcaacttctaaaaatacacattag |
316 |
Q |
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| T |
51109241 |
cgatgcagaaatgacataacctcaacggttgaattaaccgtaactgaggtttggtgtttgtttattagttagttgtgcaacttctaaaaatacacattag |
51109340 |
T |
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| Q |
317 |
tgagtgtgaatgtttccactttccagccttcttttttggcttgcgtctgtgactgtgtccaaccttctttttcacttgtgatcaatattgaaattacaag |
416 |
Q |
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| T |
51109341 |
tgagtgtgaatgtttccactttccagccttcttttttggcttgcgtctgtgactgtgtccaaccttctttttcacttgtgatcaatattgaaattacaag |
51109440 |
T |
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| Q |
417 |
tactttcttttctttgtttaccagcaaaataattctttacaacacctatagtg |
469 |
Q |
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| T |
51109441 |
tactttcttttctttgtttacgagcaaaataattctttacaacacctatagtg |
51109493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 51116634 - 51116719
Alignment:
| Q |
47 |
gagaaacatttatgggtctagtattatggaaaagcgaatgcgaatatggcataacagtagggagagttttaggtttgggaatagaa |
132 |
Q |
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| T |
51116634 |
gagaaacatttatgggtctagtactatggaaaagcgaatgtgaatatggcataaccgtagggagagttttaggcttgggagtagaa |
51116719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 51103822 - 51103850
Alignment:
| Q |
239 |
caacggttgaattaaccgtaactgaggtt |
267 |
Q |
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| T |
51103822 |
caacggttgaattaaccgtaactgaggtt |
51103850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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