View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_high_19 (Length: 385)
Name: NF3550_high_19
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_high_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 34576610 - 34576996
Alignment:
| Q |
1 |
caattgtgggatccaaagtggtggtttactctactaaattattcatatttaggaagatcaaatatgttttccgtacgacatgattc-tatatattatgaa |
99 |
Q |
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| T |
34576610 |
caattgtaggatccaaagtggtggtttactctactaaattattcatatttaggaagatcaaatatgttttccatacaacatgattcatatatattatgaa |
34576709 |
T |
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| Q |
100 |
tacaatctcttcagagnnnnnnnn-ttagttttttgttacttgcttgaacttagctaaataagtttgattatttgaattgaactagttgttgaaggtagc |
198 |
Q |
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| T |
34576710 |
tacaatctcttcagagaaaaacaaattagttttttgttacttgcttgaacttagctaaataagtttgattatttgaattgaactagttgttgaaggtagc |
34576809 |
T |
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| Q |
199 |
tactcattcacactttggttactttagactttagtttagagtatttaggaatgcatggatatataagcaaggtagtgtgtccacatttatatagaagtaa |
298 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34576810 |
tactcattcacactttgattactttagactttagtttagagtatttaggaatgcatggatatataagcaaggtagtatgtccacatttatatagaagtaa |
34576909 |
T |
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| Q |
299 |
gtctgttacagttgaaatgttcagatcagataggaataagtgacgatgctctttgaatgtcttattttttctttgccacattttcat |
385 |
Q |
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| T |
34576910 |
gtctgttacagttgaaatgtttagatcagataggaataagtgacgatgctctttgaatgtcttattttttctttgccacattttcat |
34576996 |
T |
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