View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_high_20 (Length: 372)
Name: NF3550_high_20
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 47893637 - 47893990
Alignment:
| Q |
1 |
taaaatccctgagtggaacacaacacattacgaggaagtaccattctccaaccatttcatttcaaacgacatagacatagccacttcatgcatgactgaa |
100 |
Q |
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| T |
47893637 |
taaaatccctgagtggaacacaacacaatacgaggaagtaacattctccaaccatttcatttcaaacgacatagacatacacacttcatgcatgactgaa |
47893736 |
T |
|
| Q |
101 |
gatttcgacttaccaatccatgttttctcaactgaccaattccgaatgttcgaattcaaggttcgaaaatgccaacgtggtaggtcccatgactggacgg |
200 |
Q |
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| T |
47893737 |
gatttcgacttaccaatccatgttttctcaactgaccaattccgaatgttcgaattcaaggttcgaaaatgccaacgtggtaggtcccatgactggacgg |
47893836 |
T |
|
| Q |
201 |
actgtccatactctcatcccggcgaaaaagctcgccggagagaccctcaaaaatacaattattccggcaatccttgccctgagtttcgcaaattaggaaa |
300 |
Q |
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| T |
47893837 |
actgtccatactctcatcccggtgaaaaagctcgccggagagaccctcaaaaatacaattattccggcaatccttgcccggagtttcgcaaattaggaaa |
47893936 |
T |
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| Q |
301 |
ctgcaccaaaggtgattcttgccacttcgctcatggtgtttttgaatgctggct |
354 |
Q |
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| T |
47893937 |
ctgcaccaaaggtgattcttgccacttcgctcatggtgtttttgaatgctggct |
47893990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 237
Target Start/End: Complemental strand, 42926429 - 42926332
Alignment:
| Q |
140 |
ttccgaatgttcgaattcaaggttcgaaaatgccaacgtggtaggtcccatgactggacggactgtccatactctcatcccggcgaaaaagctcgccg |
237 |
Q |
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| T |
42926429 |
ttccgcatgttcgagttcaagattcgtcgatgcgcacgtggcaggtctcatgactggacggagtgtcctttttctcatcccggcgagaaagctcgccg |
42926332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 34340199 - 34340261
Alignment:
| Q |
175 |
acgtggtaggtcccatgactggacggactgtccatactctcatcccggcgaaaaagctcgccg |
237 |
Q |
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| T |
34340199 |
acgtggaagatcacatgactggacggagtgtccatacgcacatcccggcgagaaagcacgccg |
34340261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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