View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_high_24 (Length: 332)
Name: NF3550_high_24
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 320
Target Start/End: Original strand, 6711273 - 6711571
Alignment:
| Q |
15 |
aattgcatggtgttcatatttaatctagcaaccttcaataaaatttagaaaattttcatatttcatatgagtgtccttttatagtttctattaatcaact |
114 |
Q |
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| T |
6711273 |
aattgcatggtgttcatatttaatcaa-----cttcaataaaatttagaaagttttcatatttcatatgagtgtccttttatagtttctattaatcaact |
6711367 |
T |
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| Q |
115 |
tgaatgtacaatttttcctgaattaattagtttaaattttgatatgagaccaattgcattatcnnnnnnnnngggctgcctatcccaagtaaaatctaca |
214 |
Q |
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| T |
6711368 |
tgaatgtacaatttttcctgaattaattagtttaaattttgatatgagaccaattgcatttt--ttttttttgggctgcctatcccaagtaaaatctaca |
6711465 |
T |
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| Q |
215 |
taattgtttgacttaatttcatatatcgttcatgactttaattgatagatgttatgcagaaaattctgatttaaaactttttaagactcttcaaaatggt |
314 |
Q |
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| T |
6711466 |
taattgtttgacttaatttcatatatcgttcatgactttaattgatagatgttatgcagaaaattctgatttaaaactttttaagactcttcaaaatggt |
6711565 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 320
Target Start/End: Original strand, 44511846 - 44512042
Alignment:
| Q |
125 |
atttttcctgaattaattagtttaaattttgatatgagaccaattgcattatcnnnnnnnnngggctgcctatcccaagtaaaatctacataattgtttg |
224 |
Q |
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| T |
44511846 |
atttttcgtgaattgattactttgaattttgatttgggaccaattgcattgtctttgattatgaactggctattcctagaaaaatctacaaaattatttg |
44511945 |
T |
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| Q |
225 |
acttaatttcatatatcgttcatgactttaattgatagatgttatgcagaaaattctgatttaaaacttttt-aagactcttcaaaatggtgaatct |
320 |
Q |
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| T |
44511946 |
aattcatttcagatgccattcatgattttaattggcggatgttatactgaaaattctgatttgaaactttttcttaactcttcaaaatggtggatct |
44512042 |
T |
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