View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3550_high_25 (Length: 331)

Name: NF3550_high_25
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3550_high_25
NF3550_high_25
[»] chr4 (33 HSPs)
chr4 (11-146)||(47959072-47959207)
chr4 (146-210)||(24969241-24969308)
chr4 (159-210)||(16844839-16844893)
chr4 (156-210)||(54083478-54083535)
chr4 (263-313)||(37777264-37777314)
chr4 (145-210)||(38352489-38352556)
chr4 (263-313)||(43455572-43455622)
chr4 (263-313)||(47129003-47129053)
chr4 (263-313)||(54083283-54083333)
chr4 (263-313)||(54780793-54780843)
chr4 (152-192)||(32128397-32128437)
chr4 (147-210)||(37777459-37777525)
chr4 (163-210)||(40089340-40089390)
chr4 (145-192)||(54779439-54779486)
chr4 (263-313)||(2790782-2790832)
chr4 (158-203)||(2790981-2791029)
chr4 (263-313)||(32128600-32128650)
chr4 (145-210)||(34027386-34027454)
chr4 (263-313)||(34027595-34027645)
chr4 (263-313)||(38209632-38209682)
chr4 (263-313)||(40089532-40089582)
chr4 (263-313)||(5128883-5128933)
chr4 (263-313)||(32915401-32915451)
chr4 (263-313)||(34768615-34768665)
chr4 (263-313)||(35779366-35779416)
chr4 (263-313)||(37514675-37514725)
chr4 (158-191)||(16882649-16882682)
chr4 (147-192)||(35780577-35780622)
chr4 (156-192)||(10431463-10431499)
chr4 (263-303)||(19498520-19498560)
chr4 (164-192)||(35463958-35463986)
chr4 (156-192)||(37514567-37514603)
chr4 (156-192)||(55255089-55255125)
[»] chr7 (20 HSPs)
chr7 (147-210)||(47985202-47985268)
chr7 (147-210)||(24525918-24525984)
chr7 (158-210)||(48984077-48984132)
chr7 (148-210)||(25010254-25010319)
chr7 (263-313)||(20091322-20091372)
chr7 (147-192)||(19691897-19691942)
chr7 (147-210)||(38415108-38415174)
chr7 (263-313)||(38414917-38414967)
chr7 (263-313)||(47985011-47985061)
chr7 (162-210)||(20091514-20091565)
chr7 (263-311)||(9021843-9021891)
chr7 (147-210)||(10329643-10329709)
chr7 (263-313)||(8171580-8171630)
chr7 (263-313)||(10955495-10955545)
chr7 (263-313)||(18776807-18776857)
chr7 (263-313)||(23551112-23551162)
chr7 (263-313)||(24525726-24525776)
chr7 (263-313)||(48983885-48983935)
chr7 (265-313)||(12596328-12596376)
chr7 (156-192)||(12596450-12596486)
[»] chr6 (19 HSPs)
chr6 (147-210)||(17353759-17353825)
chr6 (145-210)||(27788922-27788991)
chr6 (147-210)||(20711952-20712018)
chr6 (263-313)||(20711762-20711812)
chr6 (263-313)||(21280559-21280609)
chr6 (263-313)||(27788730-27788780)
chr6 (147-192)||(19986966-19987011)
chr6 (263-313)||(13727441-13727491)
chr6 (263-313)||(21479508-21479558)
chr6 (263-313)||(28075797-28075847)
chr6 (263-313)||(33774131-33774181)
chr6 (147-192)||(235480-235525)
chr6 (147-187)||(28075588-28075628)
chr6 (263-313)||(19737734-19737784)
chr6 (271-313)||(34397879-34397921)
chr6 (156-192)||(13727670-13727706)
chr6 (156-192)||(19741244-19741280)
chr6 (156-192)||(21280342-21280378)
chr6 (156-192)||(27314785-27314821)
[»] chr3 (31 HSPs)
chr3 (147-210)||(53507117-53507183)
chr3 (147-210)||(43207474-43207540)
chr3 (147-210)||(44708282-44708348)
chr3 (145-210)||(50939468-50939536)
chr3 (147-192)||(48156942-48156987)
chr3 (155-192)||(9878940-9878977)
chr3 (264-313)||(34290678-34290727)
chr3 (147-210)||(34290874-34290940)
chr3 (263-313)||(21582785-21582835)
chr3 (263-313)||(44708491-44708541)
chr3 (263-313)||(50939275-50939325)
chr3 (263-313)||(53506926-53506976)
chr3 (263-313)||(54407200-54407250)
chr3 (157-210)||(54407391-54407447)
chr3 (263-313)||(54619245-54619295)
chr3 (164-210)||(48720530-48720579)
chr3 (263-313)||(8073380-8073430)
chr3 (271-313)||(9878729-9878771)
chr3 (263-313)||(37168381-37168431)
chr3 (263-313)||(47467698-47467748)
chr3 (263-313)||(53149356-53149406)
chr3 (156-192)||(3954873-3954909)
chr3 (263-311)||(27078613-27078661)
chr3 (263-311)||(27084410-27084458)
chr3 (156-192)||(29620620-29620656)
chr3 (156-192)||(36716296-36716332)
chr3 (156-192)||(38681368-38681404)
chr3 (263-295)||(48157153-48157185)
chr3 (263-307)||(49393104-49393147)
chr3 (156-192)||(50258755-50258791)
chr3 (156-192)||(54619474-54619510)
[»] chr2 (21 HSPs)
chr2 (147-210)||(26715931-26715997)
chr2 (144-210)||(27506975-27507044)
chr2 (145-210)||(9045830-9045898)
chr2 (263-313)||(27506782-27506832)
chr2 (147-210)||(24410236-24410302)
chr2 (263-313)||(4505904-4505954)
chr2 (263-313)||(9046039-9046089)
chr2 (145-210)||(10762799-10762867)
chr2 (263-313)||(24410447-24410497)
chr2 (263-309)||(8907125-8907171)
chr2 (263-313)||(26716138-26716188)
chr2 (263-313)||(29939904-29939954)
chr2 (263-311)||(6965017-6965065)
chr2 (168-210)||(8327488-8327533)
chr2 (270-313)||(16097025-16097068)
chr2 (263-313)||(3155227-3155277)
chr2 (263-313)||(10762607-10762657)
chr2 (156-192)||(3155012-3155048)
chr2 (156-192)||(4505688-4505724)
chr2 (156-192)||(6964801-6964837)
chr2 (156-192)||(7162686-7162722)
[»] scaffold0039 (2 HSPs)
scaffold0039 (146-210)||(106378-106445)
scaffold0039 (263-313)||(106549-106599)
[»] chr5 (27 HSPs)
chr5 (146-210)||(16199026-16199093)
chr5 (147-210)||(27923885-27923951)
chr5 (147-210)||(38869593-38869659)
chr5 (263-313)||(9364302-9364352)
chr5 (263-313)||(27079022-27079072)
chr5 (263-313)||(27924093-27924143)
chr5 (263-313)||(28822381-28822431)
chr5 (147-210)||(40389765-40389831)
chr5 (263-313)||(16799366-16799416)
chr5 (263-313)||(34756405-34756455)
chr5 (263-313)||(36187918-36187968)
chr5 (263-313)||(38869402-38869452)
chr5 (166-210)||(9364113-9364160)
chr5 (159-210)||(16799556-16799610)
chr5 (270-313)||(19523217-19523260)
chr5 (147-204)||(7670728-7670787)
chr5 (263-313)||(7670935-7670985)
chr5 (263-313)||(16198833-16198883)
chr5 (263-313)||(23284101-23284151)
chr5 (158-192)||(28822578-28822612)
chr5 (263-307)||(2274901-2274945)
chr5 (156-192)||(15480250-15480286)
chr5 (264-312)||(16592114-16592162)
chr5 (156-192)||(19523102-19523138)
chr5 (263-307)||(22986603-22986647)
chr5 (156-192)||(31881611-31881647)
chr5 (265-313)||(40389575-40389623)
[»] chr1 (29 HSPs)
chr1 (146-210)||(13913716-13913783)
chr1 (155-210)||(1367111-1367169)
chr1 (147-210)||(9173255-9173321)
chr1 (147-210)||(40502024-40502090)
chr1 (155-206)||(44895475-44895529)
chr1 (263-313)||(40501831-40501881)
chr1 (159-210)||(27559459-27559513)
chr1 (263-313)||(1366919-1366969)
chr1 (263-313)||(5316702-5316752)
chr1 (263-313)||(6771813-6771863)
chr1 (263-313)||(9173064-9173114)
chr1 (263-313)||(9181046-9181096)
chr1 (263-313)||(23185449-23185499)
chr1 (263-313)||(27559659-27559709)
chr1 (263-313)||(44655763-44655813)
chr1 (264-313)||(19955740-19955789)
chr1 (155-192)||(23181719-23181756)
chr1 (147-210)||(17168769-17168835)
chr1 (163-210)||(19955547-19955597)
chr1 (270-313)||(5027578-5027621)
chr1 (263-313)||(14146322-14146372)
chr1 (263-309)||(51607485-51607531)
chr1 (159-192)||(5027995-5028028)
chr1 (156-192)||(6771705-6771741)
chr1 (156-192)||(14146214-14146250)
chr1 (270-306)||(17168985-17169021)
chr1 (156-192)||(41697300-41697336)
chr1 (156-192)||(44655548-44655584)
chr1 (156-192)||(50880577-50880613)
[»] chr8 (22 HSPs)
chr8 (147-210)||(42600584-42600650)
chr8 (263-313)||(23606671-23606721)
chr8 (155-210)||(23606855-23606913)
chr8 (145-192)||(10917192-10917239)
chr8 (270-313)||(10917409-10917452)
chr8 (263-313)||(7944564-7944614)
chr8 (263-313)||(23798303-23798353)
chr8 (263-313)||(42600793-42600843)
chr8 (263-313)||(45475828-45475878)
chr8 (263-311)||(13534730-13534778)
chr8 (263-311)||(13624270-13624318)
chr8 (159-210)||(23798495-23798549)
chr8 (263-311)||(30883340-30883388)
chr8 (270-313)||(5860786-5860829)
chr8 (157-192)||(45472201-45472236)
chr8 (263-313)||(37430200-37430250)
chr8 (263-311)||(2952265-2952313)
chr8 (156-192)||(2952493-2952529)
chr8 (156-192)||(5861016-5861052)
chr8 (144-192)||(15270146-15270194)
chr8 (156-192)||(20003897-20003933)
chr8 (263-307)||(34789910-34789954)
[»] scaffold0027 (1 HSPs)
scaffold0027 (155-210)||(4157-4215)
[»] scaffold0018 (1 HSPs)
scaffold0018 (263-313)||(173552-173602)
[»] scaffold0001 (1 HSPs)
scaffold0001 (156-193)||(181444-181481)
[»] scaffold0070 (1 HSPs)
scaffold0070 (156-192)||(1020-1056)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 8e-52; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 11 - 146
Target Start/End: Original strand, 47959072 - 47959207
Alignment:
Q  11 cacagatcgatggttcaaattagtttgtaaccaatttagtgattgatttggnnnnnnnnctgaactactactagtcactaatattaggtaatgaattaat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  47959072 cacagatcgatggttcaaattagtttgtaaccaatttagtgattgatttggaaaaaaaactgaactactactagtcactaatattaggtaatgaattaat 47959171  T
Q  111 cacaacttttgcagcttgataactctcaatgagcac 146  Q
    |||||||||||||||||||||||||  |||||||||    
T  47959172 cacaacttttgcagcttgataactcggaatgagcac 47959207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 24969241 - 24969308
Alignment:
Q  146 ccaggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||| || ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  24969241 ccaggtccagccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 24969308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 16844839 - 16844893
Alignment:
Q  159 tgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  16844839 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 16844893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 54083535 - 54083478
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||    
T  54083535 ccctgagggggtgcaaacagctcaatagagctgggcatccctcagtcatgggcctcaa 54083478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 37777314 - 37777264
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||||||||    
T  37777314 gtatacggtagtcattttcacctttgggtgtaccgcatatatacggcacct 37777264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 38352556 - 38352489
Alignment:
Q  145 accaggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||   |||| |||||||||||||||    
T  38352556 accaggcccggccctgagggg-tgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaa 38352489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 43455622 - 43455572
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||||||||    
T  43455622 gtatacggtagtcattttcacctttgggtgtaccgcatatatacggcacct 43455572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 47129003 - 47129053
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| |||||||||||||||| ||||||||| |||||||||||||||||    
T  47129003 gtatacggtagtcatttttacctctgggtgtaccgcatatatacggcacct 47129053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 54083333 - 54083283
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||||| |||||||||||| |||||||||||||||||    
T  54083333 gtatacggtagtcatttttatctttgggtgtaccgcatatatacggcacct 54083283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 54780793 - 54780843
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||||||||    
T  54780793 gtatacggtagtcattttcacctttgggtgtaccgcatatatacggcacct 54780843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 32128397 - 32128437
Alignment:
Q  152 cccgccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  32128397 cccggcctgagggggtgcaaacagctcaacagagctgggcc 32128437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 37777525 - 37777459
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctgg---gccctcagtcatgggcctcaa 210  Q
    ||||||| ||| |||||||||||||||||||||||||||||||    |||||| |||||||||||||    
T  37777525 caggcccggccttgagggggtgcaaacagctcaacagagctggacctccctcaatcatgggcctcaa 37777459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 40089340 - 40089390
Alignment:
Q  163 ggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  40089340 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 40089390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 54779439 - 54779486
Alignment:
Q  145 accaggccccgccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    ||||||||| |||||||||| |||||||||||||||| ||||||||||    
T  54779439 accaggcccggccctgagggagtgcaaacagctcaaccgagctgggcc 54779486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 2790832 - 2790782
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||| ||||    
T  2790832 gtatacggtagtcattttcacctttgggtgtaccgcatatatacggtacct 2790782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 2791029 - 2790981
Alignment:
Q  158 ctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgg 203  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||    
T  2791029 ctgagggggtgcaaacagctcaacagagctgggtctccctcagtcatgg 2790981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 32128600 - 32128650
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||| |||||    
T  32128600 gtatacggtagtcattttcacctttgggtgtaccgcatatatacgacacct 32128650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 34027386 - 34027454
Alignment:
Q  145 accaggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||||  || ||||||| |||||||| ||||||||||||||||   ||||||||||||||||||||    
T  34027386 accaggcctggctctgagggagtgcaaactgctcaacagagctgggtctccctcagtcatgggcctcaa 34027454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 34027595 - 34027645
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||| |||||    
T  34027595 gtataccgtagtcattttcacctttgggtgtaccgcatatatacgacacct 34027645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 38209682 - 38209632
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||| ||||||||| |||||||||||||||||    
T  38209682 gtatacggtagtcattttcacctctgggtgtaccgcatatatacggcacct 38209632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 40089532 - 40089582
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||| ||||| |||||||||||||||||    
T  40089532 gtatacggtagtcattttcacctttggatgtaccgcatatatacggcacct 40089582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 5128933 - 5128883
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||| |||||| || |||||||||||||||||    
T  5128933 gtatacggtagtcattttcacctctgggtgcactgcatatatacggcacct 5128883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 32915401 - 32915451
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||| |||||||||||| |||||||||  ||||||||||||||||    
T  32915401 gtatacggtaatcatttttacctctgggtgtaccacatatatacggcacct 32915451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 34768665 - 34768615
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||| ||||||| |||| ||||||||| |||||||||||||||||    
T  34768665 gtatacggtaatcattttcacctctgggtgtaccgcatatatacggcacct 34768615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 35779416 - 35779366
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||| ||||||| |||||||||||||| ||||||||||| |||||    
T  35779416 gtatacggtaatcattttcacctttgggtgtaccgcatatatacgacacct 35779366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 37514675 - 37514725
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||| || |||||| |||||||||||||||||    
T  37514675 gtatacggtagtcattttcacctctgagtgtaccgcatatatacggcacct 37514725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 16882682 - 16882649
Alignment:
Q  158 ctgagggggtgcaaacagctcaacagagctgggc 191  Q
    |||||| |||||||||||||||||||||||||||    
T  16882682 ctgaggaggtgcaaacagctcaacagagctgggc 16882649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 35780622 - 35780577
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    ||||||| || | |||||||||||||||||||||| ||||||||||    
T  35780622 caggcccggctccgagggggtgcaaacagctcaaccgagctgggcc 35780577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 10431499 - 10431463
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  10431499 ccctgagggggtgcaaacagctcaaacgagctgggcc 10431463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 19498520 - 19498560
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatata 303  Q
    |||||||||||||||||| |||||||| ||||| |||||||    
T  19498520 gtatacagtagtcattttcacctttggctgtaccgcatata 19498560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 192
Target Start/End: Original strand, 35463958 - 35463986
Alignment:
Q  164 gggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||||||    
T  35463958 gggtgcaaacagctcaacagagctgggcc 35463986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 37514567 - 37514603
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  37514567 ccctgagggggtgcaaacagctcaaacgagctgggcc 37514603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 55255089 - 55255125
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  55255089 ccctgagggggtgcaaacagctcaaacgagctgggcc 55255125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 47985268 - 47985202
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  47985268 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 47985202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 24525984 - 24525918
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||| ||||||||||||||||||||||||||||||||||||   |||| |||||||||||||||    
T  24525984 caggcccagccctgagggggtgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaa 24525918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 48984132 - 48984077
Alignment:
Q  158 ctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  48984132 ctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 48984077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 25010254 - 25010319
Alignment:
Q  148 aggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||   ||||||||||||||||||||    
T  25010254 aggcccggccctgagggggtacaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 25010319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 20091372 - 20091322
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||||||||    
T  20091372 gtatacggtagtcattttcacctttgggtgtaccgcatatatacggcacct 20091322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 19691897 - 19691942
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||  |||||||||||||||||||||||||||||||||||||    
T  19691897 caggcccgaccctgagggggtgcaaacagctcaacagagctgggcc 19691942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 38415174 - 38415108
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||| || |||||||| ||||||||||||||||||||||||   |||| |||||||||||||||    
T  38415174 caggcccggctctgaggggatgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaa 38415108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 38414967 - 38414917
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||||||||||||||| ||||||||||||||  |||||||||| |||||    
T  38414967 gtatacagtagtcattttcacctttgggtgtaccacatatatacgtcacct 38414917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 47985061 - 47985011
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| || |||||||| |||||||||||||| |||||||||||||||||    
T  47985061 gtatacggtggtcattttcacctttgggtgtaccgcatatatacggcacct 47985011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 20091565 - 20091514
Alignment:
Q  162 gggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||||||||||||||| |||||||||   ||||||||||||||||||||    
T  20091565 gggggtgcaaacagctcaatagagctgggcctccctcagtcatgggcctcaa 20091514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 9021891 - 9021843
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcac 311  Q
    |||||| ||||| ||||| |||||||||||||| |||||||||||||||    
T  9021891 gtatacggtagtgattttcacctttgggtgtaccgcatatatacggcac 9021843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 10329709 - 10329643
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||| | ||||||||||||||||||| ||||||| ||| ||   ||||||||||||||||||||    
T  10329709 caggcccggtcctgagggggtgcaaacagttcaacagcgctaggtctccctcagtcatgggcctcaa 10329643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 8171630 - 8171580
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| | || ||||||||| |||||||||||||||||    
T  8171630 gtatacggtagtcattttcatctctgggtgtaccgcatatatacggcacct 8171580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 10955495 - 10955545
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||| || |||||| |||||||||||||||||    
T  10955495 gtatacggtagtcattttcacctctgagtgtaccgcatatatacggcacct 10955545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 18776857 - 18776807
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| || | ||||||||| |||||||||||||||||    
T  18776857 gtatacggtagtcattttcacatctgggtgtaccgcatatatacggcacct 18776807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 23551162 - 23551112
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||| ||||| ||||||||||| |||||    
T  23551162 gtatacggtagtcattttcacctttggatgtaccgcatatatacgacacct 23551112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 24525776 - 24525726
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| || ||||||||||| ||||||| |||||||||    
T  24525776 gtatacggtagtcattttcacttttgggtgtaccgcatatacacggcacct 24525726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 48983935 - 48983885
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||| ||||| |||||||||||||| ||||||||||| |||||    
T  48983935 gtatacggtagttattttcacctttgggtgtaccgcatatatacgacacct 48983885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 12596376 - 12596328
Alignment:
Q  265 atacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||| ||||||||||| |||| |||||||||  ||||||||||||||||    
T  12596376 atacggtagtcattttcacctctgggtgtaccacatatatacggcacct 12596328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 12596486 - 12596450
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  12596486 ccctgagggggtgcaaacagctcaaacgagctgggcc 12596450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 17353759 - 17353825
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  17353759 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 17353825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 27788991 - 27788922
Alignment:
Q  145 accaggccccg-ccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  27788991 accaggccccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 27788922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 20712018 - 20711952
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||    
T  20712018 caggcccggccctgaggaggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 20711952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 20711812 - 20711762
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||||||||    
T  20711812 gtatacggtagtcattttcacctttgggtgtaccgcatatatacggcacct 20711762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 21280559 - 21280609
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| |||||||||||||||| ||||||||| |||||||||||||||||    
T  21280559 gtatacggtagtcatttttacctctgggtgtaccgcatatatacggcacct 21280609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 27788780 - 27788730
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||||||||    
T  27788780 gtatacggtagtcattttcacctttgggtgtaccgcatatatacggcacct 27788730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 19986966 - 19987011
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||    
T  19986966 caggcccggccctaagggggtgcaaacagctcaacagagctgggcc 19987011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 13727491 - 13727441
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||| ||||||||| |||||||||||||||||    
T  13727491 gtatacggtagtcattttcacctctgggtgtaccgcatatatacggcacct 13727441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 21479508 - 21479558
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||| ||||||||| |||||||||||||||||    
T  21479508 gtatacggtagtcattttcacctctgggtgtaccgcatatatacggcacct 21479558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 28075797 - 28075847
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||  |||||||||||||||||    
T  28075797 gtatacggtagtcattttcacctttgggtgtatcgcatatatacggcacct 28075847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 33774131 - 33774181
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| || ||||||||||| |||||||||||||||||    
T  33774131 gtatacggtagtcattttcacatttgggtgtaccgcatatatacggcacct 33774181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 235525 - 235480
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||  |||||||||||||||||||||| ||||||||||||||    
T  235525 caggcccgtccctgagggggtgcaaacagcttaacagagctgggcc 235480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 28075588 - 28075628
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagct 187  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  28075588 caggcccggctctgagggggtgcaaacagctcaacagagct 28075628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 19737784 - 19737734
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||| | ||||||| |||||||||||||||||    
T  19737784 gtatacggtagtcattttcacctctaggtgtaccgcatatatacggcacct 19737734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 34397879 - 34397921
Alignment:
Q  271 tagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    ||||||||||||||||| ||||||| ||||||||||| |||||    
T  34397879 tagtcatttttacctttaggtgtaccgcatatatacgtcacct 34397921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 13727706 - 13727670
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  13727706 ccctgagggggtgcaaacagctcaaacgagctgggcc 13727670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 19741280 - 19741244
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  19741280 ccctgagggggtgcaaacagctcaaacgagctgggcc 19741244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 21280342 - 21280378
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  21280342 ccctgagggggtgcaaacagctcaaacgagctgggcc 21280378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 27314821 - 27314785
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  27314821 ccctgagggggtgcaaacagctcaaacgagctgggcc 27314785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 53507183 - 53507117
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  53507183 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 53507117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 43207540 - 43207474
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||| | ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  43207540 caggcccggtcctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 43207474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 44708282 - 44708348
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||| || |||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  44708282 caggcccggctctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 44708348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 50939536 - 50939468
Alignment:
Q  145 accaggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    |||||||||  |||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||    
T  50939536 accaggcccgtccctgaggaggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 50939468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 48156942 - 48156987
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  48156942 caggcccggccctgagggggtgcaaacagctcaacagagctgggcc 48156987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 9878977 - 9878940
Alignment:
Q  155 gccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9878977 gccctgagggggtgcaaacagctcaacagagctgggcc 9878940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 34290727 - 34290678
Alignment:
Q  264 tatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    ||||| ||||||||||| |||||||||||||| |||||||||||||||||    
T  34290727 tatacggtagtcattttcacctttgggtgtaccgcatatatacggcacct 34290678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 34290940 - 34290874
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    |||||||  |||||||||||||||||||||||||||||| ||||   ||||||| ||||||||||||    
T  34290940 caggcccgaccctgagggggtgcaaacagctcaacagagttgggcctccctcaggcatgggcctcaa 34290874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 21582785 - 21582835
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||| ||||||||| |||||||||||||||||    
T  21582785 gtatacggtagtcattttcacctctgggtgtaccgcatatatacggcacct 21582835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 44708491 - 44708541
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| | |||||||||||||||    
T  44708491 gtatacggtagtcattttcacctttgggtgtaccggatatatacggcacct 44708541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 50939325 - 50939275
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||||||||||||||||||   |||||||||||||||    
T  50939325 gtatacggtagtcatttttacctttgggtgtaccatatatatacggcacct 50939275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 53506976 - 53506926
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||| ||||    
T  53506976 gtatacggtagtcattttcacctttgggtgtaccgcatatatacggtacct 53506926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 54407250 - 54407200
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||| ||||| |||||||||||||||||    
T  54407250 gtatacggtagtcattttcacctttggatgtaccgcatatatacggcacct 54407200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 54407447 - 54407391
Alignment:
Q  157 cctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||| ||||||||||||||||||||| ||||   ||||||||||||||||||||    
T  54407447 cctgaggaggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 54407391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 54619295 - 54619245
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||| ||||||||| |||||||||||||||||    
T  54619295 gtatacggtagtcattttcacctctgggtgtaccgcatatatacggcacct 54619245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 48720579 - 48720530
Alignment:
Q  164 gggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||||||||||||||||||||| |   ||||||||||||||||||||    
T  48720579 gggtgcaaacagctcaacagagctgagcttccctcagtcatgggcctcaa 48720530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 8073430 - 8073380
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| || ||||||||||| ||||||||||| |||||    
T  8073430 gtatacggtagtcattttcacttttgggtgtaccgcatatatacgacacct 8073380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Complemental strand, 9878771 - 9878729
Alignment:
Q  271 tagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||||||| |||||||||||||| |||||||||| ||||||    
T  9878771 tagtcattttcacctttgggtgtaccgcatatatactgcacct 9878729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 37168381 - 37168431
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||| |||  ||||||||||||||||    
T  37168381 gtatacggtagtcattttcacctttgggtataccacatatatacggcacct 37168431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 47467698 - 47467748
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||| ||||||||  |||||||||||||||||    
T  47467698 gtatacggtagtcattttcacctctgggtgtatcgcatatatacggcacct 47467748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 53149406 - 53149356
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||||| || || |||||| |||||||||||||||||    
T  53149406 gtatacggtagtcatttttatctctgagtgtaccgcatatatacggcacct 53149356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 3954909 - 3954873
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  3954909 ccctgagggggtgcaaacagctcaaacgagctgggcc 3954873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 27078661 - 27078613
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcac 311  Q
    |||||| ||||||||||| |||| ||||| ||| |||||||||||||||    
T  27078661 gtatacggtagtcattttcacctctgggtataccgcatatatacggcac 27078613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 27084458 - 27084410
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcac 311  Q
    |||||| ||||||||||| |||| ||||| ||| |||||||||||||||    
T  27084458 gtatacggtagtcattttcacctctgggtataccgcatatatacggcac 27084410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 29620656 - 29620620
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  29620656 ccctgagggggtgcaaacagctcaaacgagctgggcc 29620620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 36716332 - 36716296
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  36716332 ccctgagggggtgcaaacagctcaaacgagctgggcc 36716296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 38681404 - 38681368
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  38681404 ccctgagggggtgcaaacagctcaaacgagctgggcc 38681368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 48157153 - 48157185
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtac 295  Q
    |||||||||||||||||| ||||||||||||||    
T  48157153 gtatacagtagtcattttcacctttgggtgtac 48157185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 49393104 - 49393147
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacg 307  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||||    
T  49393104 gtatacggtagtaatttttacctttgggtgtaca-catatatacg 49393147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 50258791 - 50258755
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  50258791 ccctgagggggtgcaaacagctcaaatgagctgggcc 50258755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 54619510 - 54619474
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  54619510 ccctgagggggtgcaaacagctcaaacgagctgggcc 54619474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 26715931 - 26715997
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  26715931 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 26715997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 27507044 - 27506975
Alignment:
Q  144 caccaggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  27507044 caccaggcccgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 27506975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 9045830 - 9045898
Alignment:
Q  145 accaggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  9045830 accaggcccggtcctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 9045898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 27506832 - 27506782
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  27506832 gtatacagtagtcatttttacctttgggtgtaccacatatatacggcacct 27506782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 24410236 - 24410302
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    |||||||  |||| ||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  24410236 caggcccgtccctaagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 24410302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 4505904 - 4505954
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| |||||||||||||||| ||||||||| |||||||||||||||||    
T  4505904 gtatacggtagtcatttttacctctgggtgtaccgcatatatacggcacct 4505954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 9046039 - 9046089
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||||||||    
T  9046039 gtatacggtagtcattttcacctttgggtgtaccgcatatatacggcacct 9046089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 10762867 - 10762799
Alignment:
Q  145 accaggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    |||||| || ||||||||||| ||||||||||||||||||||||||   |||||| |||||||||||||    
T  10762867 accagggccggccctgaggggatgcaaacagctcaacagagctgggcttccctcaatcatgggcctcaa 10762799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 24410447 - 24410497
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||||||||    
T  24410447 gtatacggtagtcattttcacctttgggtgtaccgcatatatacggcacct 24410497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 8907171 - 8907125
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggc 309  Q
    |||||| |||||||||||||||| ||||||||| |||||||||||||    
T  8907171 gtatacggtagtcatttttacctctgggtgtaccgcatatatacggc 8907125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 26716138 - 26716188
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| ||||||||| |||||||    
T  26716138 gtatacggtagtcattttcacctttgggtgtaccgcatatatatggcacct 26716188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 29939954 - 29939904
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||| |||||    
T  29939954 gtatacggtagtcattttcacctttgggtgtaccgcatatatacgacacct 29939904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 6965017 - 6965065
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcac 311  Q
    |||||| ||||||||||| |||| ||||||||| |||||||||||||||    
T  6965017 gtatacggtagtcattttcacctctgggtgtaccgcatatatacggcac 6965065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 8327488 - 8327533
Alignment:
Q  168 gcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    |||||||||||||||||||||||   ||||||||||||||||||||    
T  8327488 gcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 8327533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 16097025 - 16097068
Alignment:
Q  270 gtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||    
T  16097025 gtagtaattttcacctttgggtgtacatcatatatacggcacct 16097068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 3155227 - 3155277
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||| | ||||||| |||||||||||||||||    
T  3155227 gtatacggtagtcattttcacctctaggtgtaccgcatatatacggcacct 3155277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 10762657 - 10762607
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| ||||||||||||||  ||||||||| ||||||    
T  10762657 gtatacggtagtcattttcacctttgggtgtaccacatatataccgcacct 10762607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 3155012 - 3155048
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  3155012 ccctgagggggtgcaaacagctcaaacgagctgggcc 3155048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 4505688 - 4505724
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  4505688 ccctgagggggtgcaaacagctcaaacgagctgggcc 4505724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 6964801 - 6964837
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  6964801 ccctgagggggtgcaaacagctcaaacgagctgggcc 6964837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 7162686 - 7162722
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  7162686 ccctgagggggtgcaaacagctcaaacgagctgggcc 7162722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 106378 - 106445
Alignment:
Q  146 ccaggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    |||||||| |||||||| |||||||||||||||||||||||||||   ||||||||||||||||||||    
T  106378 ccaggcccggccctgagagggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 106445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 106549 - 106599
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||| |||||    
T  106549 gtatacggtagtcattttcacctttgggtgtaccgcatatatacgacacct 106599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 16199093 - 16199026
Alignment:
Q  146 ccaggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    |||||| | ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  16199093 ccaggcgcggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 16199026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 27923885 - 27923951
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctgg---gccctcagtcatgggcctcaa 210  Q
    |||||||  ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  27923885 caggcccgtccctgagggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa 27923951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 38869659 - 38869593
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||| ||| |||||||||||||||||||||||| |||||||   ||||||||||||||||||||    
T  38869659 caggcccggccatgagggggtgcaaacagctcaacaaagctgggcctccctcagtcatgggcctcaa 38869593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 9364302 - 9364352
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||||||||    
T  9364302 gtatacggtagtcattttcacctttgggtgtaccgcatatatacggcacct 9364352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 27079022 - 27079072
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||||||||||||||| |||||| ||||||| |||||||||||||||||    
T  27079022 gtatacagtagtcattttcacctttaggtgtaccgcatatatacggcacct 27079072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 27924093 - 27924143
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||||||||    
T  27924093 gtatacggtagtcatttttacctttggatgtaccgcatatatacggcacct 27924143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 28822431 - 28822381
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||||||||    
T  28822431 gtatacggtagtcattttcacctttgggtgtaccgcatatatacggcacct 28822381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 40389831 - 40389765
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||| |||||||| ||||||||||||||||||||| |||||   ||||||||||||| ||||||    
T  40389831 caggcccggccctgagcgggtgcaaacagctcaacagacctgggcctccctcagtcatggacctcaa 40389765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 16799416 - 16799366
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||| ||||||| |||||||||||||| |||||||||||||||||    
T  16799416 gtatacggtaatcattttcacctttgggtgtaccgcatatatacggcacct 16799366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 34756455 - 34756405
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||| ||||||||| |||||||||||||||||    
T  34756455 gtatacggtagtcattttcacctctgggtgtaccgcatatatacggcacct 34756405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 36187968 - 36187918
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||| ||||||||| |||||||||||||||||    
T  36187968 gtatacggtagtcattttcacctctgggtgtaccgcatatatacggcacct 36187918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 38869452 - 38869402
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||| |||||    
T  38869452 gtatacggtagtcattttcacctttgggtgtaccgcatatatacgacacct 38869402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 9364113 - 9364160
Alignment:
Q  166 gtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    |||||||||||||||||||||||||   ||||||||||||||||||||    
T  9364113 gtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 9364160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 16799610 - 16799556
Alignment:
Q  159 tgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    |||||||||||||||||||||| |||||| ||   ||||||||||||||||||||    
T  16799610 tgagggggtgcaaacagctcaatagagctaggcctccctcagtcatgggcctcaa 16799556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 19523217 - 19523260
Alignment:
Q  270 gtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    ||||||||||| |||| ||||||||| |||||||||||||||||    
T  19523217 gtagtcattttcacctctgggtgtaccgcatatatacggcacct 19523260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 7670728 - 7670787
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatggg 204  Q
    ||||||| ||||||||||| ||||||||||||||||||| ||||   ||||||||||||||    
T  7670728 caggcccggccctgagggg-tgcaaacagctcaacagagttgggcctccctcagtcatggg 7670787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 7670935 - 7670985
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| | | |||||||||||||    
T  7670935 gtatacggtagtcattttcacctttgggtgtaccgtaaatatacggcacct 7670985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 16198883 - 16198833
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||  ||||||||||| |||||    
T  16198883 gtatacggtagtcattttcacctttgggtgtatcgcatatatacgacacct 16198833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 23284151 - 23284101
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| | |||||||||||| ||||||||||| |||||    
T  23284151 gtatacggtagtcattttcatctttgggtgtaccgcatatatacgacacct 23284101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 192
Target Start/End: Complemental strand, 28822612 - 28822578
Alignment:
Q  158 ctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||||| ||||||    
T  28822612 ctgagggggtgcaaacagctcaacagagttgggcc 28822578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 2274901 - 2274945
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacg 307  Q
    |||||| ||||||||||| |||| ||||||||| |||||||||||    
T  2274901 gtatacggtagtcattttcacctctgggtgtactgcatatatacg 2274945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 15480286 - 15480250
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  15480286 ccctgagggggtgcaaacagctcaaacgagctgggcc 15480250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 16592162 - 16592114
Alignment:
Q  264 tatacagtagtcatttttacctttgggtgtacagcatatatacggcacc 312  Q
    ||||| ||||||||||| |||| ||||||||| ||||||||||| ||||    
T  16592162 tatacggtagtcattttcacctctgggtgtaccgcatatatacgacacc 16592114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 19523102 - 19523138
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  19523102 ccctgagggggtgcaaacagctcaaacgagctgggcc 19523138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 22986647 - 22986603
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacg 307  Q
    |||||| ||||||||||| |||| ||||||||| |||||||||||    
T  22986647 gtatacggtagtcattttcacctatgggtgtaccgcatatatacg 22986603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 31881647 - 31881611
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  31881647 ccctgagggggtgcaaacagctcaaacgagctgggcc 31881611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 40389623 - 40389575
Alignment:
Q  265 atacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||| ||||||||||| |||||||| ||||| ||||||||||| |||||    
T  40389623 atacggtagtcattttcacctttggatgtaccgcatatatacgacacct 40389575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 13913783 - 13913716
Alignment:
Q  146 ccaggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||||  |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  13913783 ccaggcccgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 13913716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 1367169 - 1367111
Alignment:
Q  155 gccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  1367169 gccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 1367111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 9173321 - 9173255
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||    
T  9173321 caggcccggccctgagggggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 9173255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 40502090 - 40502024
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    |||||||  |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  40502090 caggcccgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 40502024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 44895475 - 44895529
Alignment:
Q  155 gccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcc 206  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  44895475 gccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcc 44895529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 40501881 - 40501831
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| |||||    
T  40501881 gtatacggtagtcatttttacctttgggtgtaccgcatatatacgacacct 40501831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 27559459 - 27559513
Alignment:
Q  159 tgagggggtgcaaacagctcaacagagctgg---gccctcagtcatgggcctcaa 210  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  27559459 tgagggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa 27559513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 1366969 - 1366919
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| | |||||||||||| |||||||||||||||||    
T  1366969 gtatacggtagtcattttcatctttgggtgtaccgcatatatacggcacct 1366919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 5316702 - 5316752
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||| ||||||||| |||||||||||||||||    
T  5316702 gtatacggtagtcattttcacctctgggtgtaccgcatatatacggcacct 5316752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 6771813 - 6771863
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||| ||||||||| |||||||||||||||||    
T  6771813 gtatacggtagtcattttcacctctgggtgtaccgcatatatacggcacct 6771863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 9173114 - 9173064
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||| ||||| |||||||||||||||||    
T  9173114 gtatacggtagtcattttcacctttggatgtaccgcatatatacggcacct 9173064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 9181096 - 9181046
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||| ||||| |||||||||||||||||    
T  9181096 gtatacggtagtcattttcacctttggatgtaccgcatatatacggcacct 9181046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 23185449 - 23185499
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||| ||||||||| |||||||||||||||||    
T  23185449 gtatacggtagtcattttcacctatgggtgtaccgcatatatacggcacct 23185499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 27559659 - 27559709
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||| |||||    
T  27559659 gtatacggtagtcattttcacctttgggtgtaccgcatatatacgacacct 27559709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 44655763 - 44655813
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| |||||||||||||||| ||||||||| ||||||||||| |||||    
T  44655763 gtatacggtagtcatttttacctctgggtgtaccgcatatatacgacacct 44655813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 19955740 - 19955789
Alignment:
Q  264 tatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    ||||| ||||||||||| |||||||||||||| |||||||||||| ||||    
T  19955740 tatacggtagtcattttcacctttgggtgtaccgcatatatacggtacct 19955789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 23181719 - 23181756
Alignment:
Q  155 gccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  23181719 gccctgagggggtgcaaacagctcaaccgagctgggcc 23181756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 17168769 - 17168835
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    |||||||  |||||||||| |||||||||||||| |||||| ||   ||||||||||||||||||||    
T  17168769 caggcccgaccctgaggggatgcaaacagctcaatagagcttggcctccctcagtcatgggcctcaa 17168835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 19955547 - 19955597
Alignment:
Q  163 ggggtgcaaacagctcaacagagctgg---gccctcagtcatgggcctcaa 210  Q
    |||||||||||||||||||||||||||    ||||||||||||||||||||    
T  19955547 ggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa 19955597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 5027578 - 5027621
Alignment:
Q  270 gtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    ||||||||||| |||| ||||||||| |||||||||||||||||    
T  5027578 gtagtcattttcacctatgggtgtaccgcatatatacggcacct 5027621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 14146322 - 14146372
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| | || ||||||||| |||||||||||||||||    
T  14146322 gtatacggtagtcattttcatctctgggtgtaccgcatatatacggcacct 14146372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 51607531 - 51607485
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggc 309  Q
    |||||| ||||||||||| || ||||||||||| |||||||||||||    
T  51607531 gtatacggtagtcattttcacgtttgggtgtaccgcatatatacggc 51607485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 5028028 - 5027995
Alignment:
Q  159 tgagggggtgcaaacagctcaacagagctgggcc 192  Q
    ||||||||||||||||||||||| ||||||||||    
T  5028028 tgagggggtgcaaacagctcaaccgagctgggcc 5027995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 6771705 - 6771741
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  6771705 ccctgagggggtgcaaacagctcaaacgagctgggcc 6771741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 14146214 - 14146250
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  14146214 ccctgagggggtgcaaacagctcaaacgagctgggcc 14146250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 17168985 - 17169021
Alignment:
Q  270 gtagtcatttttacctttgggtgtacagcatatatac 306  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  17168985 gtagtcattttcacctttgggtgtaccgcatatatac 17169021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 41697336 - 41697300
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  41697336 ccctgagggggtgcaaacagctcaaacgagctgggcc 41697300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 44655548 - 44655584
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  44655548 ccctgagggggtgcaaacagctcaaacgagctgggcc 44655584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 50880577 - 50880613
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  50880577 ccctgagggggtgcaaacagctcaaacgagctgggcc 50880613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 42600584 - 42600650
Alignment:
Q  147 caggccccgccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    |||||||  |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  42600584 caggcccgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 42600650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 23606721 - 23606671
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  23606721 gtatacggtagtcatttttacctttgggtgtaccgcatatatacggcacct 23606671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 23606913 - 23606855
Alignment:
Q  155 gccctgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||    
T  23606913 gccctgagggggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 23606855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 10917192 - 10917239
Alignment:
Q  145 accaggccccgccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||  || ||||||||||||||||||||||||||||||||||    
T  10917192 accaggcccgtccttgagggggtgcaaacagctcaacagagctgggcc 10917239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 10917409 - 10917452
Alignment:
Q  270 gtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    ||||||||||| |||||||||||||| |||||||||||||||||    
T  10917409 gtagtcattttcacctttgggtgtaccgcatatatacggcacct 10917452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 7944614 - 7944564
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||| ||||| ||||||||||||||| ||||||||||||||||    
T  7944614 gtatacggtagtgattttcacctttgggtgtacaacatatatacggcacct 7944564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 23798353 - 23798303
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| || ||||||||||| |||||||||||||||||    
T  23798353 gtatacggtagtcattttcacttttgggtgtaccgcatatatacggcacct 23798303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 42600793 - 42600843
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| ||||||||||||||  ||||||||||||||||    
T  42600793 gtatacggtagtcattttcacctttgggtgtaccacatatatacggcacct 42600843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 45475828 - 45475878
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||||||||| |||| ||||||||| |||||||||||||||||    
T  45475828 gtatacggtagtcattttcacctatgggtgtaccgcatatatacggcacct 45475878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 13534778 - 13534730
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcac 311  Q
    |||||| ||||||||||| |||| ||||||||| |||||||||||||||    
T  13534778 gtatacggtagtcattttcacctctgggtgtaccgcatatatacggcac 13534730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 13624318 - 13624270
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcac 311  Q
    |||||| ||||||||||| |||| ||||||||| |||||||||||||||    
T  13624318 gtatacggtagtcattttcacctctgggtgtaccgcatatatacggcac 13624270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 23798549 - 23798495
Alignment:
Q  159 tgagggggtgcaaacagctcaacagagctggg---ccctcagtcatgggcctcaa 210  Q
    ||||||||||| |||||||||||| |||||||   ||||||||||||||||||||    
T  23798549 tgagggggtgcgaacagctcaacaaagctgggcctccctcagtcatgggcctcaa 23798495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 30883340 - 30883388
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcac 311  Q
    |||||| ||||||||||| |||| ||||||||| |||||||||||||||    
T  30883340 gtatacggtagtcattttcacctctgggtgtaccgcatatatacggcac 30883388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 5860829 - 5860786
Alignment:
Q  270 gtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    ||||||||||| |||| ||||||||| |||||||||||||||||    
T  5860829 gtagtcattttcacctctgggtgtaccgcatatatacggcacct 5860786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 45472201 - 45472236
Alignment:
Q  157 cctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    ||||||||||||||||||||||||| ||||||||||    
T  45472201 cctgagggggtgcaaacagctcaaccgagctgggcc 45472236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 37430250 - 37430200
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| |||||||||||||||| | ||||||  |||||||||||||||||    
T  37430250 gtatacggtagtcatttttacctctaggtgtaacgcatatatacggcacct 37430200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 2952313 - 2952265
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcac 311  Q
    |||||| ||||||||||| | || ||||||||| |||||||||||||||    
T  2952313 gtatacggtagtcattttcatctctgggtgtaccgcatatatacggcac 2952265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 2952529 - 2952493
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  2952529 ccctgagggggtgcaaacagctcaaacgagctgggcc 2952493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 5861052 - 5861016
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  5861052 ccctgagggggtgcaaacagctcaaacgagctgggcc 5861016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 15270194 - 15270146
Alignment:
Q  144 caccaggccccgccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    ||||||| || |||||| || |||||||||||||| |||||||||||||    
T  15270194 caccagggccggccctggggaggtgcaaacagctctacagagctgggcc 15270146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 20003933 - 20003897
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  20003933 ccctgagggggtgcaaacagctcaaacgagctgggcc 20003897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 34789954 - 34789910
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacg 307  Q
    |||||| ||||| ||||| ||||||||||||||| ||||||||||    
T  34789954 gtatacggtagtgattttcacctttgggtgtacaacatatatacg 34789910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 4157 - 4215
Alignment:
Q  155 gccctgagggggtgcaaacagctcaacagagctgggc--cct-cagtcatgggcctcaa 210  Q
    |||||||| ||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  4157 gccctgagagggtgcaaacagctcaacagagctgggcctcctccagtcatgggcctcaa 4215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 173602 - 173552
Alignment:
Q  263 gtatacagtagtcatttttacctttgggtgtacagcatatatacggcacct 313  Q
    |||||| ||||| |||||||||||||||||||  |||||||||||| ||||    
T  173602 gtatacggtagtgatttttacctttgggtgtatcgcatatatacggtacct 173552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 181444 - 181481
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggccc 193  Q
    |||||||||||||||||||||||||  |||||||||||    
T  181444 ccctgagggggtgcaaacagctcaaacgagctgggccc 181481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 1020 - 1056
Alignment:
Q  156 ccctgagggggtgcaaacagctcaacagagctgggcc 192  Q
    |||||||||||||||||||||||||  ||||||||||    
T  1020 ccctgagggggtgcaaacagctcaaacgagctgggcc 1056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University