View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_high_34 (Length: 253)
Name: NF3550_high_34
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 68 - 235
Target Start/End: Complemental strand, 41717234 - 41717067
Alignment:
| Q |
68 |
catgatctaaaatgttttatatgttagaaaatgtttttattaattgagataaacttacaagaaaagaataaannnnnnnnnnnnnnnnnnnnnnatattc |
167 |
Q |
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| T |
41717234 |
catgatctaaaatgttttatatgttagaaaatgtttttattaattgagataaacttatgagaaaagaataaatttttctacattttcattttttatattc |
41717135 |
T |
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| Q |
168 |
atcatcaaatgtgtgaaattgtgtaaaaaatacagtaaaataaaattaggggtaaatcaaccaagtga |
235 |
Q |
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| T |
41717134 |
atcatcaaatgtgtgaaattgtgtaaaaaatacagtaaaataaaattaggggtaaatcaaccgagtga |
41717067 |
T |
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