View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_high_37 (Length: 248)
Name: NF3550_high_37
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 13858994 - 13859224
Alignment:
| Q |
1 |
tttgttgtcccactttcaaaatacaacaatgctttatttgtctctcaattgtccattggattgagatttgatatgatgtttgagacaaaagcatttgata |
100 |
Q |
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| T |
13858994 |
tttgttgttccactttcaaaatacaacaatgctttatttgtctctcaattgtccattggattgagatttgatatgatgtttgagacaaaagcatttgata |
13859093 |
T |
|
| Q |
101 |
cgtgctggtaaaccaaatttctgaactattgaactctgtgtgtaatgtagcatctatttttgctaaggttacatagatatataatatacagatattcttt |
200 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
13859094 |
cgtgctggtaaatcaaacatctgaactattgaactctgtgtgtaatgtagcatctatttttgctaaggctacatagatatataatatacgtatattcttt |
13859193 |
T |
|
| Q |
201 |
atactgtcattgatgtgtgtaaaatgttttt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
13859194 |
atactgtcattgatgtgtgtaaaatgttttt |
13859224 |
T |
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