View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3550_high_4 (Length: 753)

Name: NF3550_high_4
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3550_high_4
NF3550_high_4
[»] chr7 (5 HSPs)
chr7 (276-741)||(1368632-1369099)
chr7 (37-203)||(45525443-45525610)
chr7 (37-123)||(1369146-1369232)
chr7 (663-741)||(24840898-24840976)
chr7 (162-211)||(1369095-1369144)
[»] chr8 (4 HSPs)
chr8 (208-653)||(23571563-23572010)
chr8 (663-741)||(18179988-18180066)
chr8 (664-736)||(5646347-5646419)
chr8 (680-741)||(26375605-26375666)
[»] chr1 (4 HSPs)
chr1 (368-487)||(7657873-7657992)
chr1 (491-654)||(7657611-7657775)
chr1 (37-204)||(38076874-38077042)
chr1 (666-714)||(28660058-28660106)
[»] chr4 (1 HSPs)
chr4 (662-696)||(52900489-52900523)


Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 276 - 741
Target Start/End: Complemental strand, 1369099 - 1368632
Alignment:
Q  276 aatcatcttccttaaatttcacccc-tttcattcttgcaatattgacccctaatcccattgttgaattgtgattcggagctgaaaacagagcttgcattt 374  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1369099 aatcatcttccttaaatttcaccccctttcattcttgcaatattgactcctaatcccattgttgaattgtgattcggaactgaaaacagagcttgcattt 1369000  T
Q  375 tagtaatagcttgaatacatcgcgatgctccaacatcatgccttctaaccaagtgaacgcgaacaacagcttggaacttcactacattcttactctttag 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1368999 tagtaatagcttgaatacatcgcgatgctccaacatcatgccttctaaccaagtgaacgcgaacaacagcttgcaacttcactacattcttactctttag 1368900  T
Q  475 aagtgctctccgaactaaatatcctctaattgaagcctggatga-tatcgcagcaaattctggaggattgacatccatcgtactctcaatttttgtgata 573  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||  ||||||    
T  1368899 aagtgctctccgaactaaatatcctctaattgaagcctggatgattatcgcagcagattctggaggattaacatccatcgtactctcaatttcggtgata 1368800  T
Q  574 attatttctggcatctctgagcatgcatcagaggataaccgcggcttcttattagagaaatatgttgtacaaatcttctcattggtggattctttaatgt 673  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1368799 attatttctggcatctctgagcatgcatcggaggataaccgcggcttcttattagagaaatatgttgtacaaatcttctcattggtggattccttaatgt 1368700  T
Q  674 attcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattc 741  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1368699 attcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattc 1368632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 37 - 203
Target Start/End: Original strand, 45525443 - 45525610
Alignment:
Q  37 gtggtgtttgaatcacatcagaggtaacatgctccgaagcatcaaatat-tgaccatcatctgtttcacgaataaccattatggcactactatattgttt 135  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  45525443 gtggtgtttgaatcaaatcagaggtaacatgctcccaagcatcaaatatatgaccatcatctgtttcatgaataaccattatggcactgctatattgttt 45525542  T
Q  136 aacttcccttaaaatgtcttcttttaatcgagcttccattttctccactatttcacagtcaataccct 203  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  45525543 agcttcccttaaaatgtcttcttttaatcgagcttccattttctccactctttcacagtcaataccct 45525610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 1369232 - 1369146
Alignment:
Q  37 gtggtgtttgaatcacatcagaggtaacatgctccgaagcatcaaatattgaccatcatctgtttcacgaataaccattatggcact 123  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1369232 gtggtgtttgaatcacatcagaggtaacatattccgaagcatcaaatattgaccatcatctatttcacgaataaccattatggcact 1369146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 663 - 741
Target Start/End: Complemental strand, 24840976 - 24840898
Alignment:
Q  663 ttctttaatgtattcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattc 741  Q
    ||||||||||||| |||| |||||||| |||||||||||| ||||||||||||| | || ||||| |||||||||||||    
T  24840976 ttctttaatgtatacttctattgtggcgacaaaactatcagcaacattcacgttaggtaactgacccttagttacattc 24840898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 1369144 - 1369095
Alignment:
Q  162 atcgagcttccattttctccactatttcacagtcaataccctaggaatca 211  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||    
T  1369144 atcgagcttccattttctccactatttcacagtcaatactctgggaatca 1369095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 208 - 653
Target Start/End: Complemental strand, 23572010 - 23571563
Alignment:
Q  208 atcaaccatagaactgtgggtagaaaattcggtttgaattgaggctgaagatt-gcaaggtaaaacccaaatcatcttccttaaatttcacccctttcat 306  Q
    |||||||||| ||  |||||||||||||||||||||||||||||||||||||| ||  |||||||||| |||||||||||||||| ||||||| ||||||    
T  23572010 atcaaccataaaatcgtgggtagaaaattcggtttgaattgaggctgaagatttgctcggtaaaaccccaatcatcttccttaaacttcacccttttcat 23571911  T
Q  307 tcttgcaatattgacccctaatcccattgttgaattgtgattcggagctgaaaacagagcttgcattttagtaatagcttgaatacatcgcgatgctcca 406  Q
    ||| || | | |||  |||||||||||||||||||||| ||| ||||||||| |  || |||||||||||||||||||||||| |  |||||||||||||    
T  23571910 tctcgcgacaatgagtcctaatcccattgttgaattgtaattaggagctgaagatggaccttgcattttagtaatagcttgaacatgtcgcgatgctcca 23571811  T
Q  407 acatcatgccttctaaccaagtgaacgcgaacaacagcttggaacttcactacattcttactctttagaagtgctctccgaactaaatatcctctaattg 506  Q
    ||| |||||||||||||||||||  |||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  23571810 acagcatgccttctaaccaagtgtccgcgaacaacagcttgcaatttcactacattcttactatttagaagtgctctccgaaccaaatatcctctaattg 23571711  T
Q  507 aagcctggatga-tatcgcagcaaattctggaggattgacatccatcgtactctcaatttttgtgataattatttctggcatctctgagcatgcatcaga 605  Q
    |||||||||| | ||  |||||| |||| |||||||||||||||| | ||||||||||||  ||||||||| || ||||||| || ||||||||||  ||    
T  23571710 aagcctggattattaatgcagcagattccggaggattgacatccaccatactctcaatttcggtgataattgttcctggcatatccgagcatgcattgga 23571611  T
Q  606 ggataaccgcggcttcttattagagaaatatgttgtacaaatcttctc 653  Q
    ||||||| |  |||||| ||||||||||| ||||||||||||||||||    
T  23571610 ggataactgtagcttctcattagagaaatctgttgtacaaatcttctc 23571563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 663 - 741
Target Start/End: Original strand, 18179988 - 18180066
Alignment:
Q  663 ttctttaatgtattcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattc 741  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||| || |||||||||||||||||||    
T  18179988 ttctttaatgtattcttccattgtagcaacaaaactgtcagcaacattcacgttcggtaactgacacttagttacattc 18180066  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 664 - 736
Target Start/End: Original strand, 5646347 - 5646419
Alignment:
Q  664 tctttaatgtattcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagtta 736  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||| | || ||||| ||||||||    
T  5646347 tctttcatgtattcttccattgtggcaacaaaactatcagcaacattcacgttaggtaactgacccttagtta 5646419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 680 - 741
Target Start/End: Complemental strand, 26375666 - 26375605
Alignment:
Q  680 ccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattc 741  Q
    |||||||||||| |||||||||| |||||||||| |||| || |||||||||||||||||||    
T  26375666 ccattgtggcaataaaactatcagcaacattcactttcggtaactgacacttagttacattc 26375605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 1e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 368 - 487
Target Start/End: Complemental strand, 7657992 - 7657873
Alignment:
Q  368 tgcattttagtaatagcttgaatacatcgcgatgctccaacatcatgccttctaaccaagtgaacgcgaacaacagcttggaacttcactacattcttac 467  Q
    |||||||||| ||||||||||| ||||||| ||| ||||||| |||||||||||||||||||  | |||||| ||||||| ||||||||| |||||||||    
T  7657992 tgcattttagcaatagcttgaacacatcgcaatgttccaacagcatgccttctaaccaagtgcccacgaacagcagcttgcaacttcactgcattcttac 7657893  T
Q  468 tctttagaagtgctctccga 487  Q
    ||||||||||||||||||||    
T  7657892 tctttagaagtgctctccga 7657873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 491 - 654
Target Start/End: Complemental strand, 7657775 - 7657611
Alignment:
Q  491 aaatatcctctaattgaagcctggatgat-atcgcagcaaattctggaggattgacatccatcgtactctcaatttttgtgataattatttctggcatct 589  Q
    ||||||||||||||||||||||||||||| ||| ||||| |||| || ||||||||||||| | || ||||| | |  |||| |||| ||||||||||||    
T  7657775 aaatatcctctaattgaagcctggatgattatcacagcagattccggtggattgacatccaccttattctcagtctcggtgacaattgtttctggcatct 7657676  T
Q  590 ctgagcatgcatcagaggataaccgcggcttcttattagagaaatatgttgtacaaatcttctca 654  Q
    | |||||  |||| ||||||||| ||||||| | ||||||||||| |||||||||||||||||||    
T  7657675 ccgagcagacatcggaggataactgcggcttttcattagagaaatctgttgtacaaatcttctca 7657611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 37 - 204
Target Start/End: Complemental strand, 38077042 - 38076874
Alignment:
Q  37 gtggtgtttgaatcacatcagaggtaacatgctccgaagcatcaaatat-tgaccatcatctgtttcacgaataaccattatggcactactatattgttt 135  Q
    |||| |||||||| ||||||||||| || |||||| |||||||| |||| || ||||| ||||||||| ||||||||||||||||| |   ||| || |     
T  38077042 gtggggtttgaattacatcagaggttacttgctcccaagcatcatatatctgcccatcgtctgtttcatgaataaccattatggcattgtcatactgctc 38076943  T
Q  136 aacttcccttaaaatgtcttcttttaatcgagcttccattttctccactatttcacagtcaatacccta 204  Q
    | |||||||||  || ||||||||||| || |||||||||||||||||  |||||| | |||| |||||    
T  38076942 agcttcccttaggatatcttcttttaaccgggcttccattttctccaccctttcacggccaattcccta 38076874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 666 - 714
Target Start/End: Original strand, 28660058 - 28660106
Alignment:
Q  666 tttaatgtattcttccattgtggcaacaaaactatcaacaacattcacg 714  Q
    ||||||||||||||||| ||||||| ||||||||||| |||| ||||||    
T  28660058 tttaatgtattcttccaatgtggcaccaaaactatcagcaacgttcacg 28660106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 662 - 696
Target Start/End: Complemental strand, 52900523 - 52900489
Alignment:
Q  662 attctttaatgtattcttccattgtggcaacaaaa 696  Q
    |||||||||||||||||||||||||||||||||||    
T  52900523 attctttaatgtattcttccattgtggcaacaaaa 52900489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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