View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3550_high_52 (Length: 233)

Name: NF3550_high_52
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3550_high_52
NF3550_high_52
[»] chr7 (6 HSPs)
chr7 (19-162)||(25194530-25194673)
chr7 (164-208)||(46576378-46576422)
chr7 (164-216)||(48460661-48460713)
chr7 (164-210)||(51940-51986)
chr7 (163-217)||(38349586-38349640)
chr7 (164-209)||(30922845-30922890)
[»] chr1 (13 HSPs)
chr1 (164-208)||(2403061-2403105)
chr1 (164-208)||(1673371-1673415)
chr1 (166-208)||(29637346-29637388)
chr1 (164-208)||(1994955-1994999)
chr1 (164-208)||(13276600-13276644)
chr1 (164-208)||(27325764-27325808)
chr1 (164-208)||(44797602-44797646)
chr1 (164-208)||(46845792-46845836)
chr1 (164-210)||(6487730-6487776)
chr1 (163-208)||(33502660-33502705)
chr1 (167-212)||(49430596-49430641)
chr1 (164-208)||(527035-527079)
chr1 (164-208)||(40030840-40030884)
[»] chr3 (7 HSPs)
chr3 (164-209)||(8330727-8330772)
chr3 (164-208)||(9271112-9271156)
chr3 (166-208)||(33288136-33288178)
chr3 (159-208)||(23004753-23004802)
chr3 (164-208)||(50989205-50989249)
chr3 (164-208)||(51092337-51092381)
chr3 (165-208)||(38247801-38247844)
[»] chr4 (16 HSPs)
chr4 (164-208)||(5817516-5817560)
chr4 (164-208)||(45996030-45996074)
chr4 (165-208)||(3287087-3287130)
chr4 (164-210)||(25784042-25784088)
chr4 (164-208)||(17044005-17044049)
chr4 (164-208)||(20107112-20107156)
chr4 (164-208)||(25164607-25164651)
chr4 (164-208)||(32290216-32290260)
chr4 (164-208)||(37605827-37605871)
chr4 (164-208)||(39631274-39631318)
chr4 (164-208)||(43749094-43749138)
chr4 (164-208)||(55281210-55281254)
chr4 (165-208)||(51579323-51579366)
chr4 (164-210)||(32525156-32525202)
chr4 (164-208)||(24059269-24059313)
chr4 (168-208)||(42179273-42179313)
[»] chr2 (10 HSPs)
chr2 (164-208)||(14242651-14242695)
chr2 (164-216)||(40095265-40095317)
chr2 (164-210)||(32599382-32599428)
chr2 (164-208)||(3121612-3121656)
chr2 (164-208)||(13697101-13697145)
chr2 (164-208)||(14945872-14945916)
chr2 (164-208)||(17823581-17823625)
chr2 (168-208)||(36709327-36709367)
chr2 (164-206)||(23860302-23860344)
chr2 (164-214)||(25333146-25333196)
[»] chr8 (7 HSPs)
chr8 (164-210)||(43066038-43066084)
chr8 (163-210)||(31523646-31523693)
chr8 (163-217)||(12142082-12142136)
chr8 (164-210)||(45413672-45413718)
chr8 (164-208)||(1993776-1993820)
chr8 (164-208)||(2599533-2599577)
chr8 (164-208)||(14342325-14342369)
[»] chr5 (5 HSPs)
chr5 (163-217)||(43100335-43100389)
chr5 (164-208)||(13988249-13988293)
chr5 (164-208)||(15285331-15285375)
chr5 (164-208)||(36890379-36890423)
chr5 (157-208)||(6043001-6043050)
[»] chr6 (5 HSPs)
chr6 (164-217)||(34792778-34792831)
chr6 (164-208)||(14314122-14314166)
chr6 (165-210)||(1244690-1244735)
chr6 (164-208)||(9045835-9045879)
chr6 (164-208)||(23915974-23916018)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 25194673 - 25194530
Alignment:
Q  19 ttattttcagtgtagccatacatttgtccaatcaagcatcccttattagagactacgctttcgccattctactcgatgttgtcggacactcgtttttcga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||    
T  25194673 ttattttcagtgtagccatacatttgtccaatcaagcatcccttattagagaccacgctttcgccattctactcgatgttgtcgaacacttgtttttcga 25194574  T
Q  119 tgtgttttttgtgtacgtgtcaagtacaaattgttaggatttaa 162  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  25194573 tgtgttttttgtgtacttgtcaagtacaaattgttaggatttaa 25194530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 46576422 - 46576378
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  46576422 gtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 46576378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 48460661 - 48460713
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtacatcaacata 216  Q
    |||||||||||||||||| ||||| ||| |||||||| ||||||||| |||||    
T  48460661 gtagtgatacatagaccaccttaggtggcatgtaccatttgtacatccacata 48460713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 51940 - 51986
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtacatc 210  Q
    |||||||||||||||||| ||||| |||||||||| | |||||||||    
T  51940 gtagtgatacatagaccaccttaggtggtatgtactatttgtacatc 51986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 38349640 - 38349586
Alignment:
Q  163 ggtagtgatacatagaccatcttagatggtatgtaccacttgtacatcaacatat 217  Q
    |||||||||||||| |||||||||| ||| || ||||||||||||| | ||||||    
T  38349640 ggtagtgatacataaaccatcttaggtggcatataccacttgtacacccacatat 38349586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 30922890 - 30922845
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtacat 209  Q
    ||||||||||||||| || ||||| ||||||||||||| |||||||    
T  30922890 gtagtgatacatagatcaccttaggtggtatgtaccacatgtacat 30922845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 2403105 - 2403061
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  2403105 gtagtgatacatagaccatcttagatggcatgtaccacttgtaca 2403061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 1673371 - 1673415
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||    
T  1673371 gtagtgatacatagaccatcttaggtggcatgtaccacttgtaca 1673415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 29637388 - 29637346
Alignment:
Q  166 agtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||||||| ||| ||||||||||||||||    
T  29637388 agtgatacatagaccatcttaggtggcatgtaccacttgtaca 29637346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 1994955 - 1994999
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  1994955 gtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 1994999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 13276644 - 13276600
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||||||||||||||| ||||    
T  13276644 gtagtgatacatagaccaccttaggtggtatgtaccacttataca 13276600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 27325808 - 27325764
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  27325808 gtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 27325764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 44797646 - 44797602
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  44797646 gtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 44797602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 46845836 - 46845792
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||||||| ||||||||||| ||||    
T  46845836 gtagtgatacatagaccaccttagatggcatgtaccacttataca 46845792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 6487730 - 6487776
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtacatc 210  Q
    ||||||||||||||||||  |||| ||| ||||||||||||||||||    
T  6487730 gtagtgatacatagaccaatttaggtggcatgtaccacttgtacatc 6487776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 33502705 - 33502660
Alignment:
Q  163 ggtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||||  |||||||  ||||||||||||||||    
T  33502705 ggtagtgatacatagaccacattagatgacatgtaccacttgtaca 33502660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 49430641 - 49430596
Alignment:
Q  167 gtgatacatagaccatcttagatggtatgtaccacttgtacatcaa 212  Q
    ||||||||||||||| ||||| ||| ||||||||||| ||||||||    
T  49430641 gtgatacatagaccaccttaggtggcatgtaccacttatacatcaa 49430596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 527079 - 527035
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||| ||||    
T  527079 gtagtgatacatagaccaccttaggtggcatgtaccacttataca 527035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 40030840 - 40030884
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| | | ||||||||||||||||    
T  40030840 gtagtgatacatagaccaccttaggtagcatgtaccacttgtaca 40030884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 8330772 - 8330727
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtacat 209  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||    
T  8330772 gtagtgatacatagaccaccttagatggcatgtaccacttgtacat 8330727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 9271112 - 9271156
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||    
T  9271112 gtagtgatacatagaccaccttagatggcatgtaccacttgtaca 9271156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 33288136 - 33288178
Alignment:
Q  166 agtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||| ||||| ||||||||||||||||||||    
T  33288136 agtgatacatagaccaccttaggtggtatgtaccacttgtaca 33288178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 23004753 - 23004802
Alignment:
Q  159 ttaaggtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||| |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  23004753 ttaaagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 23004802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 50989205 - 50989249
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  50989205 gtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 50989249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 51092337 - 51092381
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  51092337 gtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 51092381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 38247801 - 38247844
Alignment:
Q  165 tagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||||    
T  38247801 tagtgatacatagaccaccttaggtggcatgtaccacttgtaca 38247844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 5817560 - 5817516
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||    
T  5817560 gtagtgatacatagaccatcttaggtggcatgtaccacttgtaca 5817516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 45996074 - 45996030
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||    
T  45996074 gtagtgatacatagaccatcttaggtggcatgtaccacttgtaca 45996030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 3287087 - 3287130
Alignment:
Q  165 tagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||| |||| ||||||||||||||||||||||||||    
T  3287087 tagtgatacataaaccaccttagatggtatgtaccacttgtaca 3287130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 25784088 - 25784042
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtacatc 210  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||||    
T  25784088 gtagtgatacatagatcatcttaggtggcatgtaccacttgtacatc 25784042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 17044005 - 17044049
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  17044005 gtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 17044049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 20107112 - 20107156
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  20107112 gtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 20107156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 25164651 - 25164607
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  25164651 gtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 25164607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 32290216 - 32290260
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||||||||| ||| ||||||||||| ||||    
T  32290216 gtagtgatacatagaccatcttaggtggcatgtaccacttataca 32290260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 37605871 - 37605827
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  37605871 gtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 37605827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 39631318 - 39631274
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  39631318 gtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 39631274  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 43749094 - 43749138
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  43749094 gtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 43749138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 55281210 - 55281254
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  55281210 gtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 55281254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 51579323 - 51579366
Alignment:
Q  165 tagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||||    
T  51579323 tagtgatacatagaccaccttaggtggcatgtaccacttgtaca 51579366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 32525202 - 32525156
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtacatc 210  Q
    |||||||||||||||||||||||| ||| || |||||||| ||||||    
T  32525202 gtagtgatacatagaccatcttaggtggcatataccacttatacatc 32525156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 24059313 - 24059269
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||||||| ||||| || |||||||    
T  24059313 gtagtgatacatagaccaccttagatggcatgtatcatttgtaca 24059269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 42179313 - 42179273
Alignment:
Q  168 tgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||| ||||| ||||||||||||||| ||||    
T  42179313 tgatacatagaccaccttaggtggtatgtaccacttataca 42179273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 14242695 - 14242651
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||    
T  14242695 gtagtgatacatagaccatcttaggtggtatgtaccacctgtaca 14242651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 40095265 - 40095317
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtacatcaacata 216  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||| |||||    
T  40095265 gtagtgatacatagaccaccttagatgacatgtaccacttgtacatccacata 40095317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 32599428 - 32599382
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtacatc 210  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||||    
T  32599428 gtagtgatacatagaccaccttaggtggcatgtaccacttgtacatc 32599382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 3121612 - 3121656
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||||||| ||||||||||| ||||    
T  3121612 gtagtgatacatagaccaccttagatggcatgtaccacttataca 3121656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 13697145 - 13697101
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  13697145 gtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 13697101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 14945916 - 14945872
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  14945916 gtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 14945872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 17823581 - 17823625
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||||    
T  17823581 gtagtgatacataaaccaccttagatggtatgtatcacttgtaca 17823625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 36709367 - 36709327
Alignment:
Q  168 tgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||||| ||||||||||||||| ||||    
T  36709367 tgatacatagaccatcttaggtggtatgtaccacttataca 36709327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 23860344 - 23860302
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgta 206  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||    
T  23860344 gtagtgatacatagaccaccttaggtggcatgtaccacttgta 23860302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 25333146 - 25333196
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtacatcaaca 214  Q
    ||||| |||||||||||| ||| ||| | ||||||||||||||||||||||    
T  25333146 gtagttatacatagaccaccttggatcgcatgtaccacttgtacatcaaca 25333196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 43066084 - 43066038
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtacatc 210  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||||    
T  43066084 gtagtgatacatagaccaccttaggtggcatgtaccacttgtacatc 43066038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 31523693 - 31523646
Alignment:
Q  163 ggtagtgatacatagaccatcttagatggtatgtaccacttgtacatc 210  Q
    |||||||||| |||||||||||||||||  ||||| ||||||||||||    
T  31523693 ggtagtgatagatagaccatcttagatgacatgtatcacttgtacatc 31523646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 12142082 - 12142136
Alignment:
Q  163 ggtagtgatacatagaccatcttagatggtatgtaccacttgtacatcaacatat 217  Q
    |||||||||||||| |||| ||||| ||| || ||||||||||||||| ||||||    
T  12142082 ggtagtgatacataaaccaccttaggtggcatataccacttgtacatccacatat 12142136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 45413718 - 45413672
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtacatc 210  Q
    |||||||||||||||||| ||||| ||| ||||||||||| ||||||    
T  45413718 gtagtgatacatagaccaccttaggtggcatgtaccacttatacatc 45413672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 1993820 - 1993776
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||| ||||||||||    
T  1993820 gtagtgatacatagaccaccttaggtggcatgtatcacttgtaca 1993776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 2599533 - 2599577
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||| ||||    
T  2599533 gtagtgatacatagaccaccttaggtggcatgtaccacttataca 2599577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 14342369 - 14342325
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||| ||||    
T  14342369 gtagtgatacatagaccaccttaggtggcatgtaccacttataca 14342325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 43100389 - 43100335
Alignment:
Q  163 ggtagtgatacatagaccatcttagatggtatgtaccacttgtacatcaacatat 217  Q
    |||||||||||||| |||||||||| |||||| ||||||||||||| | ||||||    
T  43100389 ggtagtgatacataaaccatcttaggtggtatataccacttgtacacccacatat 43100335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 13988249 - 13988293
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  13988249 gtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 13988293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 15285331 - 15285375
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||||||| ||||||||||| ||||    
T  15285331 gtagtgatacatagaccaccttagatggcatgtaccacttataca 15285375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 36890379 - 36890423
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  36890379 gtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 36890423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 6043001 - 6043050
Alignment:
Q  157 atttaaggtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||| ||||||||||||||| || ||||||||  ||||||||||||||||||    
T  6043001 attttaggtagtgatacataaacaatcttaga--gtatgtaccacttgtaca 6043050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 34792831 - 34792778
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtacatcaacatat 217  Q
    |||||||||||||||||| ||||| ||| |||||||||||||||| | ||||||    
T  34792831 gtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacatat 34792778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 14314166 - 14314122
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  14314166 gtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 14314122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 1244735 - 1244690
Alignment:
Q  165 tagtgatacatagaccatcttagatggtatgtaccacttgtacatc 210  Q
    ||||||||||||||||| ||||  ||| ||||||||||||||||||    
T  1244735 tagtgatacatagaccaccttaagtggcatgtaccacttgtacatc 1244690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 9045835 - 9045879
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    |||||||||||||||||| ||||| ||| ||||| ||||||||||    
T  9045835 gtagtgatacatagaccaccttaggtggcatgtatcacttgtaca 9045879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 23915974 - 23916018
Alignment:
Q  164 gtagtgatacatagaccatcttagatggtatgtaccacttgtaca 208  Q
    ||||||||||||||| || ||||||||| ||||||||||| ||||    
T  23915974 gtagtgatacatagatcaccttagatggcatgtaccacttataca 23916018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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