View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_high_55 (Length: 230)
Name: NF3550_high_55
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_high_55 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 44645228 - 44645443
Alignment:
| Q |
1 |
aatagatctagtggataacgtaaggcaattgctattgaatggtgaaaatatttgagatttgtttctaagagattgctaataaaaatgtagtatatattat |
100 |
Q |
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| T |
44645228 |
aatagatctagtggataacgtaaggcaattgctattgaatggtgaaaatatttgagatttgtttc-aagagattgctaataaaaatgtagt-tatattat |
44645325 |
T |
|
| Q |
101 |
atggttaaataattggcattcgtcaatgacctagagttagctaaccaactaatttcattt-----attttgtgctgactaagaactaagaaggggtcttg |
195 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
44645326 |
atggttaaataattggcattcgtcaatgacctagatttagctaaccaactaatttcatttcattcattctgtgctgactaagaactaagaaggggtcttg |
44645425 |
T |
|
| Q |
196 |
acttagctagctactatg |
213 |
Q |
| |
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|||||||||||||||||| |
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| T |
44645426 |
acttagctagctactatg |
44645443 |
T |
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