View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3550_high_62 (Length: 217)

Name: NF3550_high_62
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3550_high_62
NF3550_high_62
[»] chr7 (17 HSPs)
chr7 (18-199)||(39555637-39555818)
chr7 (25-90)||(44405935-44406000)
chr7 (35-90)||(16783633-16783688)
chr7 (44-90)||(15648449-15648495)
chr7 (40-89)||(4789278-4789327)
chr7 (25-90)||(13471932-13471997)
chr7 (44-90)||(13471565-13471611)
chr7 (44-90)||(20346960-20347006)
chr7 (44-89)||(11290534-11290579)
chr7 (40-89)||(41648238-41648287)
chr7 (44-89)||(42670561-42670606)
chr7 (25-90)||(45987036-45987101)
chr7 (30-90)||(6345542-6345602)
chr7 (46-90)||(31717130-31717174)
chr7 (30-90)||(32750182-32750242)
chr7 (45-89)||(36678498-36678542)
chr7 (30-90)||(38574972-38575032)
[»] scaffold0024 (1 HSPs)
scaffold0024 (25-90)||(37487-37552)
[»] chr1 (21 HSPs)
chr1 (25-90)||(3751380-3751445)
chr1 (30-89)||(30633078-30633137)
chr1 (25-90)||(44778795-44778860)
chr1 (44-88)||(30022735-30022779)
chr1 (30-89)||(36042356-36042415)
chr1 (44-90)||(1105810-1105855)
chr1 (44-90)||(5669165-5669211)
chr1 (44-90)||(6789143-6789189)
chr1 (44-90)||(28334556-28334602)
chr1 (44-90)||(48411089-48411135)
chr1 (44-90)||(50591862-50591908)
chr1 (25-90)||(1377532-1377597)
chr1 (44-89)||(14422655-14422700)
chr1 (44-89)||(19237765-19237810)
chr1 (44-89)||(27266029-27266074)
chr1 (44-89)||(47979187-47979232)
chr1 (40-88)||(33056434-33056482)
chr1 (30-90)||(36218876-36218936)
chr1 (25-89)||(38213122-38213186)
chr1 (25-89)||(40434380-40434444)
chr1 (30-90)||(42283189-42283249)
[»] chr5 (21 HSPs)
chr5 (43-94)||(17886135-17886186)
chr5 (25-90)||(104045-104110)
chr5 (25-90)||(1007608-1007673)
chr5 (40-89)||(25864443-25864492)
chr5 (25-90)||(31125733-31125798)
chr5 (25-89)||(10596604-10596668)
chr5 (30-89)||(18256926-18256985)
chr5 (25-88)||(26910858-26910921)
chr5 (25-88)||(40509512-40509575)
chr5 (44-90)||(8526119-8526165)
chr5 (44-90)||(11112675-11112721)
chr5 (25-90)||(6257846-6257911)
chr5 (44-89)||(7001741-7001786)
chr5 (44-85)||(11690720-11690761)
chr5 (44-89)||(38901419-38901464)
chr5 (44-89)||(40509899-40509944)
chr5 (44-88)||(27581460-27581504)
chr5 (44-88)||(38900460-38900504)
chr5 (25-89)||(39741284-39741348)
chr5 (25-89)||(40975557-40975621)
chr5 (46-90)||(42547234-42547278)
[»] chr4 (21 HSPs)
chr4 (35-89)||(26487822-26487876)
chr4 (44-90)||(26903009-26903055)
chr4 (25-90)||(22787176-22787241)
chr4 (25-90)||(38705077-38705142)
chr4 (25-89)||(9369988-9370052)
chr4 (25-88)||(1924090-1924153)
chr4 (30-89)||(23454754-23454813)
chr4 (44-90)||(5092579-5092625)
chr4 (44-90)||(16192454-16192500)
chr4 (40-90)||(20752714-20752764)
chr4 (44-90)||(36703443-36703489)
chr4 (25-90)||(2514327-2514392)
chr4 (25-90)||(32800830-32800895)
chr4 (44-89)||(33180295-33180340)
chr4 (25-94)||(35683355-35683424)
chr4 (44-89)||(36703830-36703875)
chr4 (25-90)||(45176550-45176615)
chr4 (44-89)||(51864098-51864143)
chr4 (25-85)||(10398052-10398112)
chr4 (30-90)||(25368933-25368993)
chr4 (25-85)||(35120322-35120382)
[»] chr8 (23 HSPs)
chr8 (40-89)||(38302498-38302547)
chr8 (25-85)||(22200030-22200090)
chr8 (25-89)||(41926009-41926073)
chr8 (30-89)||(38072902-38072961)
chr8 (25-88)||(42787686-42787749)
chr8 (40-90)||(17950866-17950916)
chr8 (46-88)||(35024810-35024852)
chr8 (44-90)||(40713930-40713976)
chr8 (44-85)||(5096401-5096442)
chr8 (25-90)||(9135345-9135410)
chr8 (44-89)||(9135721-9135766)
chr8 (25-86)||(12666662-12666723)
chr8 (43-88)||(16975689-16975734)
chr8 (44-89)||(18150722-18150767)
chr8 (25-90)||(30025833-30025898)
chr8 (44-89)||(35160617-35160662)
chr8 (44-89)||(35575306-35575351)
chr8 (40-89)||(38179380-38179429)
chr8 (25-90)||(41865600-41865665)
chr8 (44-89)||(42026226-42026271)
chr8 (44-88)||(11655382-11655426)
chr8 (44-88)||(21142220-21142264)
chr8 (25-85)||(34115102-34115162)
[»] chr6 (7 HSPs)
chr6 (25-90)||(10839045-10839110)
chr6 (25-90)||(32244957-32245022)
chr6 (25-89)||(10685924-10685988)
chr6 (44-90)||(26541443-26541489)
chr6 (44-94)||(28662740-28662790)
chr6 (44-88)||(22734493-22734537)
chr6 (30-90)||(33684409-33684469)
[»] chr3 (20 HSPs)
chr3 (25-90)||(16207183-16207248)
chr3 (30-90)||(30821631-30821691)
chr3 (26-90)||(47743122-47743186)
chr3 (30-89)||(54239786-54239845)
chr3 (24-90)||(4229724-4229790)
chr3 (44-94)||(21863717-21863767)
chr3 (44-90)||(23803602-23803648)
chr3 (44-90)||(38472621-38472667)
chr3 (44-90)||(49220785-49220831)
chr3 (44-90)||(51335750-51335796)
chr3 (30-87)||(6134640-6134697)
chr3 (44-89)||(8399320-8399365)
chr3 (44-85)||(9253813-9253854)
chr3 (44-89)||(42163486-42163531)
chr3 (45-94)||(45339247-45339296)
chr3 (44-89)||(52252637-52252682)
chr3 (30-90)||(8398933-8398993)
chr3 (44-88)||(17551922-17551966)
chr3 (44-88)||(31184937-31184981)
chr3 (40-88)||(49083734-49083782)
[»] chr2 (11 HSPs)
chr2 (40-89)||(38203915-38203964)
chr2 (42-88)||(4565810-4565856)
chr2 (40-90)||(6197545-6197595)
chr2 (30-88)||(6732118-6732176)
chr2 (44-90)||(10362081-10362127)
chr2 (44-89)||(5192238-5192283)
chr2 (25-90)||(12565486-12565551)
chr2 (25-90)||(27306046-27306111)
chr2 (47-88)||(30911423-30911463)
chr2 (40-89)||(35808648-35808697)
chr2 (25-90)||(41246024-41246088)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 9e-63; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 39555818 - 39555637
Alignment:
Q  18 agatatggatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttggaatacnnnnnnnnggaaatttcttttt 117  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| || ||||||           ||||| |||||    
T  39555818 agatatcgatgaaaaacttttgaggaactaaaagttgaagaaaaattatagaagtattaaaatgaaaaatttgaatactttttttttacaattttttttt 39555719  T
Q  118 gaatatttatagagacaaaaaatatttaactttagatttaattcatacgcaaacatagatatattttacattgtcaactaat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39555718 gaatatttatagagacaaaaaatatttaactttagatttaattcatacgcaaacatagatatattttacattgtcaactaat 39555637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 44405935 - 44406000
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||||||| |||| |||||||||||||||||| |||||| |||||| ||||||| ||||||||||    
T  44405935 gatgaaaaaattttaaggaactaaaagttgaaggaaaattttagaaggattaaaatgaaaagttgg 44406000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 16783688 - 16783633
Alignment:
Q  35 ttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||| |||||||||||||| |||||| |||||| | ||||||||||||||||    
T  16783688 ttttcagggactaaaagttgaaggaaaattttagaaggactaaaacgaaaagttgg 16783633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 15648449 - 15648495
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||||||||||||||||||| |||| | ||||||||||||||||||    
T  15648449 actaaaagttgaagaaaaattttagaggaattaaaacgaaaagttgg 15648495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 4789278 - 4789327
Alignment:
Q  40 aggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||||||| |||||| |||||| | |||||||||||||||    
T  4789278 aggaactaaaagttgaaggaaaattttagaaggactaaaacgaaaagttg 4789327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 13471932 - 13471997
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||| |||| |||| |||||||||||||||||| |||||| |||| | | ||||||||||||||||    
T  13471932 gatgcaaaaattttaaggaactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 13471997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 13471611 - 13471565
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||||    
T  13471611 actaaaagttgaagaaaaattttagagggactaaaacgaaaagttgg 13471565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 20347006 - 20346960
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||||| |||||| |||| | ||||||||||||||||||    
T  20347006 actaaaagttgaaggaaaattttagaggaattaaaacgaaaagttgg 20346960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 11290534 - 11290579
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||| |||||| |||| | |||||||||||||||||    
T  11290534 actaaaagttgaaggaaaattttagagggattaaaacgaaaagttg 11290579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 41648287 - 41648238
Alignment:
Q  40 aggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||||||| |||||| |||| | | |||||||||||||||    
T  41648287 aggaactaaaagttgaaggaaaattttagagggactaaaacgaaaagttg 41648238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 42670606 - 42670561
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||| |||||| |||| | |||||||||||||||||    
T  42670606 actaaaagttgaaggaaaattttagaggaattaaaacgaaaagttg 42670561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 45987036 - 45987101
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||| |||| |||| ||| |||||||||||||| |||||| |||| | | ||||||||||||||||    
T  45987036 gatggaaaattttttagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 45987101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 6345542 - 6345602
Alignment:
Q  30 aaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||| |||| ||| ||||||||||||||  ||||| |||| | ||||||||||||||||||    
T  6345542 aaaaattttgagggactaaaagttgaagggaaattttagagggattaaaacgaaaagttgg 6345602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 31717130 - 31717174
Alignment:
Q  46 taaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||| |||||| |||| | ||||||||||||||||||    
T  31717130 taaaagttgaaggaaaattttagagggattaaaacgaaaagttgg 31717174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 32750242 - 32750182
Alignment:
Q  30 aaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||| |||| ||| |||||||||||||| |||||| |||| | | ||||||||||||||||    
T  32750242 aaaatttttaagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 32750182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 36678498 - 36678542
Alignment:
Q  45 ctaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    ||||||||||||||||| || |||||| | |||||||||||||||    
T  36678498 ctaaaagttgaagaaaatttttagaaggactaaaacgaaaagttg 36678542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 38574972 - 38575032
Alignment:
Q  30 aaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||| |||| ||| |||||||||||||| |||||| |||| | | ||||||||||||||||    
T  38574972 aaaatttttaagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 38575032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 37552 - 37487
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||| |||| |||| |||||||||||||||||| |||||| |||||| | ||||||||||||||||    
T  37552 gatggaaaattttttaggaactaaaagttgaaggaaaattttagaaggactaaaacgaaaagttgg 37487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 3751445 - 3751380
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||||||| |||| ||| |||||||||||||| |||||| |||| | ||||||||||||||||||    
T  3751445 gatgaaaaaattttaagggactaaaagttgaaggaaaattttagagggattaaaacgaaaagttgg 3751380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 30633137 - 30633078
Alignment:
Q  30 aaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    ||||||||  |||||||||||||||||| ||||||||||| | | |||||||||||||||    
T  30633137 aaaactttataggaactaaaagttgaaggaaaattatagagggactaaaacgaaaagttg 30633078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 44778795 - 44778860
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||||||| |||| |||||||||||||||||||||| || |||| | | |||||| |||||||||    
T  44778795 gatgaaaaaattttaaggaactaaaagttgaagaaaatttttagagggactaaaacaaaaagttgg 44778860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 30022779 - 30022735
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagtt 88  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||||    
T  30022779 actaaaagttgaagaaatattttagaaggattaaaacgaaaagtt 30022735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 36042415 - 36042356
Alignment:
Q  30 aaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    ||||||||  ||| |||||||||||||| |||||| |||||| | |||||||||||||||    
T  36042415 aaaactttatagggactaaaagttgaaggaaaattttagaaggactaaaacgaaaagttg 36042356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 1105855 - 1105810
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||||    
T  1105855 actaaaagttgaagaaaaatt-tagaaggattaaaacaaaaagttgg 1105810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 5669165 - 5669211
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||||| |||||| |||||| | ||||||||||||||||    
T  5669165 actaaaagttgaaggaaaattttagaaggactaaaacgaaaagttgg 5669211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 6789143 - 6789189
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||||    
T  6789143 actaaaagttgaagaaaaattttagagggactaaaacgaaaagttgg 6789189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 28334602 - 28334556
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||||| |||||| |||| | ||||||||||||||||||    
T  28334602 actaaaagttgaaggaaaattttagagggattaaaacgaaaagttgg 28334556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 48411135 - 48411089
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||||| ||||||||||| | ||||||| ||||||||||    
T  48411135 actaaaagttgaaggaaaattatagaggaattaaaatgaaaagttgg 48411089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 50591908 - 50591862
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||||| |||||| |||||| | ||||||||||||||||    
T  50591908 actaaaagttgaaggaaaattttagaaggactaaaacgaaaagttgg 50591862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 1377532 - 1377597
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||||||  |||| ||| |||||||||||||| |||||| |||| | | ||||||||||||||||    
T  1377532 gatgaaaatttttttagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 1377597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 14422700 - 14422655
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||| |||||| |||||| | |||||||||||||||    
T  14422700 actaaaagttgaaggaaaattttagaaggactaaaacgaaaagttg 14422655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 19237810 - 19237765
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    ||||||||||||||||||||| |||| | | |||||||||||||||    
T  19237810 actaaaagttgaagaaaaattttagagggactaaaacgaaaagttg 19237765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 27266029 - 27266074
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||| |||||| |||| | |||||||||||||||||    
T  27266029 actaaaagttgaaggaaaattttagagggattaaaacgaaaagttg 27266074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 47979232 - 47979187
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||| |||||| |||| | |||||||||||||||||    
T  47979232 actaaaagttgaaggaaaattttagagggattaaaacgaaaagttg 47979187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 33056434 - 33056482
Alignment:
Q  40 aggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagtt 88  Q
    |||||||||||||||||| |||||| |||| | | ||||||||||||||    
T  33056434 aggaactaaaagttgaaggaaaattttagagggagtaaaacgaaaagtt 33056482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 36218936 - 36218876
Alignment:
Q  30 aaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||| |||| ||| |||||||||||||| |||||| |||| | | ||||||||||||||||    
T  36218936 aaaattttttagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 36218876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 38213186 - 38213122
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||| |||| |||| ||| |||||||||||||| |||||| |||| | | |||||||||||||||    
T  38213186 gatggaaaaatttttagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagttg 38213122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 40434444 - 40434380
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||| |||| |||| ||| |||||||||||||| |||||| |||| | | |||||||||||||||    
T  40434444 gatgcaaaaattttaagggactaaaagttgaaggaaaattttagaggaactaaaacgaaaagttg 40434380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 42283249 - 42283189
Alignment:
Q  30 aaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||| |||| ||| |||||||||||||| |||||| |||| | | ||||||||||||||||    
T  42283249 aaaattttttagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 42283189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 17886186 - 17886135
Alignment:
Q  43 aactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttggaata 94  Q
    ||||||||||||||| |||||| |||| | ||||||||||||||||||||||    
T  17886186 aactaaaagttgaaggaaaattttagagggattaaaacgaaaagttggaata 17886135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 104045 - 104110
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||| |||| |||| ||| |||||||||||||| |||||| |||| ||| ||||||||||||||||    
T  104045 gatggaaaaatttttagggactaaaagttgaaggaaaattttagaggtactaaaacgaaaagttgg 104110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 1007673 - 1007608
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||| |||| |||| ||||| |||||||||||| |||||| || ||| ||||||||||||||||||    
T  1007673 gatggaaaattttttaggaattaaaagttgaaggaaaattttaaaaggattaaaacgaaaagttgg 1007608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 25864492 - 25864443
Alignment:
Q  40 aggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||||||| |||||| |||||| | |||||||||||||||    
T  25864492 aggaactaaaagttgaaggaaaattttagaaggactaaaacgaaaagttg 25864443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 31125733 - 31125798
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||||| | ||||||||| ||||||||| ||| |||| | |||||||| |||||||||    
T  31125733 gatgaaaaacttttaaagaactaaaaattgaagaaatattttagagggattaaaacaaaaagttgg 31125798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 10596604 - 10596668
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||| ||||||||| ||| |||||||||||||||||  || |||| | |||||||||||||||||    
T  10596604 gatggaaaactttttagggactaaaagttgaagaaattttttagagggattaaaacgaaaagttg 10596668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 18256985 - 18256926
Alignment:
Q  30 aaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    ||||||||  ||| |||||||||||||| |||||| |||||| | |||||||||||||||    
T  18256985 aaaactttatagggactaaaagttgaaggaaaattttagaaggactaaaacgaaaagttg 18256926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 26910858 - 26910921
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagtt 88  Q
    |||| |||| |||| ||| |||||||||||||| |||||| |||||| | ||||||||||||||    
T  26910858 gatggaaaatttttaagggactaaaagttgaaggaaaattttagaaggactaaaacgaaaagtt 26910921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 40509575 - 40509512
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagtt 88  Q
    ||||||||| |||| ||| |||||||||||||| |||||| |||| | | ||||||||||||||    
T  40509575 gatgaaaaatttttaagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagtt 40509512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 8526119 - 8526165
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||||| |||||| |||| | ||||||||||||||||||    
T  8526119 actaaaagttgaaggaaaattttagaggcattaaaacgaaaagttgg 8526165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 11112721 - 11112675
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||||| |||||| |||||| | ||||||||||||||||    
T  11112721 actaaaagttgaaggaaaattttagaaggactaaaacgaaaagttgg 11112675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 6257911 - 6257846
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||| ||| |||||||| ||||||||||||||||| ||| |||  | | ||||||||||||||||    
T  6257911 gatgagaaatttttcagggactaaaagttgaagaaacattttagggggactaaaacgaaaagttgg 6257846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 7001786 - 7001741
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||| |||||| |||||| | |||||||||||||||    
T  7001786 actaaaagttgaaggaaaattttagaaggactaaaacgaaaagttg 7001741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 11690720 - 11690761
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaa 85  Q
    |||||||||||||| |||||| |||||| |||||||||||||    
T  11690720 actaaaagttgaaggaaaattttagaagaattaaaacgaaaa 11690761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 38901419 - 38901464
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||  |||||| |||||| |||||||||||||||||    
T  38901419 actaaaagttgaaagaaaattttagaaggattaaaacgaaaagttg 38901464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 40509899 - 40509944
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||| ||||||||||| | | |||||||||||||||    
T  40509899 actaaaagttgaaggaaaattatagagggactaaaacgaaaagttg 40509944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 27581504 - 27581460
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagtt 88  Q
    |||||||||||||| ||| || |||||| ||||||||||||||||    
T  27581504 actaaaagttgaaggaaatttttagaaggattaaaacgaaaagtt 27581460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 38900504 - 38900460
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagtt 88  Q
    |||||||||||||| |||||| |||||| | ||||||||||||||    
T  38900504 actaaaagttgaaggaaaattttagaaggactaaaacgaaaagtt 38900460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 39741284 - 39741348
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||  ||||| ||| |||||||| ||||| ||||||||||| | | |||||||||||||||    
T  39741284 gatgaaattcttttgagggactaaaagctgaaggaaaattatagagggactaaaacgaaaagttg 39741348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 40975621 - 40975557
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||| |||| |||| ||| |||||||||||||| |||||| |||| | | |||||||||||||||    
T  40975621 gatggaaaattttttagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagttg 40975557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 42547278 - 42547234
Alignment:
Q  46 taaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||| |||||| |||||| | ||||||||||||||||    
T  42547278 taaaagttgaaggaaaattttagaaggactaaaacgaaaagttgg 42547234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 26487876 - 26487822
Alignment:
Q  35 ttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||| |||||||||||||||||||||| || |||||| ||||||| |||||||||    
T  26487876 tttttaggaactaaaagttgaagaaaatttttagaaggattaaaatgaaaagttg 26487822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 26903009 - 26903055
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||||| |||||| |||||| ||||||||||||||||||    
T  26903009 actaaaagttgaaggaaaattttagaaggattaaaacgaaaagttgg 26903055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 22787176 - 22787241
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||||||| |||| ||| |||||||||||||| |||||| |||| | | ||||||||||||||||    
T  22787176 gatgaaaaaattttaagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 22787241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 38705077 - 38705142
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||||||| |||| ||| |||||||||||||| |||||| |||| | | ||||||||||||||||    
T  38705077 gatgaaaaaattttaagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 38705142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 9370052 - 9369988
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    ||||||||| |||| ||| |||||||||||||| |||||| |||| | | |||||||||||||||    
T  9370052 gatgaaaaaattttaagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagttg 9369988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 1924153 - 1924090
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagtt 88  Q
    |||| |||| |||| ||| |||||||||||||| |||||| |||||| | ||||||||||||||    
T  1924153 gatggaaaatttttaagggactaaaagttgaaggaaaattttagaaggactaaaacgaaaagtt 1924090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 23454754 - 23454813
Alignment:
Q  30 aaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    ||||||||  ||| |||||||||||||| |||||| |||||| | |||||||||||||||    
T  23454754 aaaactttatagggactaaaagttgaaggaaaattttagaaggactaaaacgaaaagttg 23454813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 5092625 - 5092579
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||||    
T  5092625 actaaaagttgaagaaaaattttagagggactaaaacgaaaagttgg 5092579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 16192500 - 16192454
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||||| |||||| |||| | ||||||||||||||||||    
T  16192500 actaaaagttgaaggaaaattttagagggattaaaacgaaaagttgg 16192454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 20752764 - 20752714
Alignment:
Q  40 aggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||||||||| |||||| |||| | | ||||||||||||||||    
T  20752764 aggaactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 20752714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 36703489 - 36703443
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||||| |||||| |||| | ||||||||||||||||||    
T  36703489 actaaaagttgaaggaaaattttagagggattaaaacgaaaagttgg 36703443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 2514392 - 2514327
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||||||| |||| ||| |||||||||||| | |||||| |||| | ||||||| ||||||||||    
T  2514392 gatgaaaaattttttagggactaaaagttgagggaaaattttagagggattaaaatgaaaagttgg 2514327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 32800895 - 32800830
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||| ||||||||| ||| |||||||||||||| |||||| |||| | | ||||| ||||||||||    
T  32800895 gatggaaaactttttagggactaaaagttgaaggaaaattttagagggactaaaatgaaaagttgg 32800830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 33180340 - 33180295
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||| |||||| |||| | |||||||||||||||||    
T  33180340 actaaaagttgaaggaaaattttagaggaattaaaacgaaaagttg 33180295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 35683424 - 35683355
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttggaata 94  Q
    ||||||||| |||| ||| |||||||||||||||||  || |||| | ||||||||||||| ||| ||||    
T  35683424 gatgaaaaattttttagggactaaaagttgaagaaattttttagagggattaaaacgaaaaattgaaata 35683355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 36703830 - 36703875
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||| |||||| |||||| | |||||||||||||||    
T  36703830 actaaaagttgaaggaaaattttagaaggactaaaacgaaaagttg 36703875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 45176550 - 45176615
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||||||  |||| ||| |||||||||||||| |||||| |||| | | ||||||||||||||||    
T  45176550 gatgaaaatttttttagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 45176615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 51864098 - 51864143
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||| |||||| |||| | |||||||||||||||||    
T  51864098 actaaaagttgaaggaaaattttagagggattaaaacgaaaagttg 51864143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 10398052 - 10398112
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaa 85  Q
    ||||||||| |||| ||| |||||||||||||| |||||| |||| | | |||||||||||    
T  10398052 gatgaaaaaattttaagggactaaaagttgaaggaaaattttagaggaactaaaacgaaaa 10398112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 25368933 - 25368993
Alignment:
Q  30 aaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||| |||| ||| |||||||||||||| |||||| |||| | | ||||||||||||||||    
T  25368933 aaaatttttaagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 25368993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 35120322 - 35120382
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaa 85  Q
    ||||||||| |||| ||| ||||||| |||||| |||||| |||| | |||||||||||||    
T  35120322 gatgaaaaaatttttagggactaaaaattgaaggaaaattttagagggattaaaacgaaaa 35120382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 38302547 - 38302498
Alignment:
Q  40 aggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    ||||||||||||||||||||||||| |||| | | |||||||||||||||    
T  38302547 aggaactaaaagttgaagaaaaattttagaggaactaaaacgaaaagttg 38302498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 22200030 - 22200090
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaa 85  Q
    |||| |||| |||| ||| |||||||||||||| |||||| |||||| |||||||||||||    
T  22200030 gatggaaaattttttagggactaaaagttgaaggaaaattttagaaggattaaaacgaaaa 22200090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 41926009 - 41926073
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||| |||| |||| ||| ||||||||||||||||||| | |||| | |||||||||||||||||    
T  41926009 gatggaaaaatttttagggactaaaagttgaagaaaaaatttagagggattaaaacgaaaagttg 41926073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 38072902 - 38072961
Alignment:
Q  30 aaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||| |||||||| |||||||||||||| |||||| |||| | | |||||||||||||||    
T  38072902 aaaatttttcagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagttg 38072961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 42787749 - 42787686
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagtt 88  Q
    ||||||||| |||| ||  |||||||||||||| |||||| |||||| |||||||| |||||||    
T  42787749 gatgaaaaaattttaagagactaaaagttgaaggaaaattttagaaggattaaaacaaaaagtt 42787686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 17950866 - 17950916
Alignment:
Q  40 aggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||||||||| |||||| |||| | | ||||||||||||||||    
T  17950866 aggaactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 17950916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 35024810 - 35024852
Alignment:
Q  46 taaaagttgaagaaaaattatagaagtattaaaacgaaaagtt 88  Q
    |||||||||||| |||||| |||||| ||||||||||||||||    
T  35024810 taaaagttgaaggaaaattttagaagaattaaaacgaaaagtt 35024852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 40713976 - 40713930
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||||    
T  40713976 actaaaagttgaagaaaaattttagagggactaaaacgaaaagttgg 40713930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 5096442 - 5096401
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaa 85  Q
    |||||||||||||| |||||| |||||| |||||||||||||    
T  5096442 actaaaagttgaaggaaaattttagaagaattaaaacgaaaa 5096401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 9135410 - 9135345
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||||||  |||| ||| |||||||||||||| |||||| |||| | | ||||||||||||||||    
T  9135410 gatgaaaattttttaagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 9135345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 9135721 - 9135766
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    ||||||||||||||||||||| |||| | | |||||||||||||||    
T  9135721 actaaaagttgaagaaaaattttagaggaactaaaacgaaaagttg 9135766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 12666723 - 12666662
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaag 86  Q
    ||||||||| |||| ||| |||||||||||||| |||||| |||| | | ||||||||||||    
T  12666723 gatgaaaaaattttaagggactaaaagttgaaggaaaattttagagggactaaaacgaaaag 12666662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 16975734 - 16975689
Alignment:
Q  43 aactaaaagttgaagaaaaattatagaagtattaaaacgaaaagtt 88  Q
    ||||||||||||||| |||||| |||| | ||||||||||||||||    
T  16975734 aactaaaagttgaaggaaaattttagagggattaaaacgaaaagtt 16975689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 18150722 - 18150767
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||| |||||| |||| | |||||||||||||||||    
T  18150722 actaaaagttgaaggaaaattttagagggattaaaacgaaaagttg 18150767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 30025833 - 30025898
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||| |||| |||| ||| |||||||||||||| |||||| |||| | | ||||||||||||||||    
T  30025833 gatggaaaatttttaagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 30025898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 35160662 - 35160617
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    ||||||||||||||||||||| |||| | | |||||||||||||||    
T  35160662 actaaaagttgaagaaaaattttagagggactaaaacgaaaagttg 35160617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 35575306 - 35575351
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    ||||||||||||||||||||| |||| | | |||||||||||||||    
T  35575306 actaaaagttgaagaaaaattttagagggactaaaacgaaaagttg 35575351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 38179429 - 38179380
Alignment:
Q  40 aggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||||||| |||||| |||  | |||||||||||||||||    
T  38179429 aggaactaaaagttgaaggaaaattgtagtgggattaaaacgaaaagttg 38179380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 41865665 - 41865600
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||| |||| |||| ||| |||||||||||||| |||||| |||| | | ||||||||||||||||    
T  41865665 gatggaaaaattttgagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 41865600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 42026226 - 42026271
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||| |||||| |||||| | |||||||||||||||    
T  42026226 actaaaagttgaaggaaaattttagaaggactaaaacgaaaagttg 42026271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 11655426 - 11655382
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagtt 88  Q
    ||||||||| |||| |||||| |||||| ||||||||||||||||    
T  11655426 actaaaagtcgaaggaaaattttagaaggattaaaacgaaaagtt 11655382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 21142220 - 21142264
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagtt 88  Q
    |||||||||||||| |||||| |||||| | ||||||||||||||    
T  21142220 actaaaagttgaaggaaaattttagaagaactaaaacgaaaagtt 21142264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 34115102 - 34115162
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaa 85  Q
    |||| |||| |||| ||| |||||||||||||  |||||| |||||| |||||||||||||    
T  34115102 gatggaaaaatttttagggactaaaagttgaaagaaaattttagaaggattaaaacgaaaa 34115162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 10839110 - 10839045
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||||||| |||| ||| |||||||||||||| |||||| |||||| | ||||| ||||||||||    
T  10839110 gatgaaaaatttttaagggactaaaagttgaaggaaaattttagaaggactaaaatgaaaagttgg 10839045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 32245022 - 32244957
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||||||| |||| ||| |||||||||||||| |||||| |||| | | ||||||||||||||||    
T  32245022 gatgaaaaaattttaagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 32244957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 10685988 - 10685924
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    ||||||||||||||   | ||||||||||||||||||||| |||||| | |||||| ||||||||    
T  10685988 gatgaaaaacttttggagcactaaaagttgaagaaaaattttagaaggactaaaacaaaaagttg 10685924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 26541489 - 26541443
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||||| |||||| |||| | ||||||||||||||||||    
T  26541489 actaaaagttgaaggaaaattttagagggattaaaacgaaaagttgg 26541443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 28662790 - 28662740
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttggaata 94  Q
    |||||||||||||| |||||| |||| | | ||||||||||||||||||||    
T  28662790 actaaaagttgaaggaaaattttagagggactaaaacgaaaagttggaata 28662740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 22734493 - 22734537
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagtt 88  Q
    |||||||||||||| |||||| |||||| | ||||||||||||||    
T  22734493 actaaaagttgaaggaaaattttagaaggactaaaacgaaaagtt 22734537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 33684409 - 33684469
Alignment:
Q  30 aaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||| |||| ||| |||||||||||||| |||||| |||| | | ||||||||||||||||    
T  33684409 aaaatttttaagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 33684469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 16207183 - 16207248
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||| |||| |||| ||| |||||||||||||| |||||| |||| | ||||||||||||||||||    
T  16207183 gatggaaaaatttttagggactaaaagttgaaggaaaattttagagggattaaaacgaaaagttgg 16207248  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 30821631 - 30821691
Alignment:
Q  30 aaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||| |||| |||||||||||||||||| |||||| |||| | | ||||||||||||||||    
T  30821631 aaaaatttttaggaactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 30821691  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 47743122 - 47743186
Alignment:
Q  26 atgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||| |||| ||| |||||||||||||| |||||| |||||  | ||||||||||||||||    
T  47743122 atgaaaaaattttgagggactaaaagttgaaggaaaattttagaatgactaaaacgaaaagttgg 47743186  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 54239786 - 54239845
Alignment:
Q  30 aaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    ||||||||  ||| |||||||||||||| |||||| |||||| | |||||||||||||||    
T  54239786 aaaactttatagggactaaaagttgaaggaaaattttagaaggactaaaacgaaaagttg 54239845  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 4229724 - 4229790
Alignment:
Q  24 ggatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||| |||| |||| |||||||||||||||||  |||||| |||| | | ||||||||||||||||    
T  4229724 ggatggaaaaatttttaggaactaaaagttgaaagaaaattttagagggactaaaacgaaaagttgg 4229790  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 21863767 - 21863717
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttggaata 94  Q
    |||||||||||||| |||||| |||| | | ||||||||||||||||||||    
T  21863767 actaaaagttgaaggaaaattttagagggactaaaacgaaaagttggaata 21863717  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 23803648 - 23803602
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||||| |||||| |||||  ||||||||||||||||||    
T  23803648 actaaaagttgaaggaaaattttagaaagattaaaacgaaaagttgg 23803602  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 38472621 - 38472667
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||||    
T  38472621 actaaaagttgaagaaaaattttagagggactaaaacgaaaagttgg 38472667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 49220831 - 49220785
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||||| |||||| |||| | ||||||||||||||||||    
T  49220831 actaaaagttgaaggaaaattttagagggattaaaacgaaaagttgg 49220785  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 51335750 - 51335796
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||||| |||||| |||| | ||||||||||||||||||    
T  51335750 actaaaagttgaaggaaaattttagagggattaaaacgaaaagttgg 51335796  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 6134697 - 6134640
Alignment:
Q  30 aaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagt 87  Q
    |||| |||| |||||||||||||||||||||| || |||| | | |||||||||||||    
T  6134697 aaaattttttaggaactaaaagttgaagaaaagttttagagggactaaaacgaaaagt 6134640  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 8399320 - 8399365
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    ||||||||||||||||||||| |||| | | |||||||||||||||    
T  8399320 actaaaagttgaagaaaaattttagagggactaaaacgaaaagttg 8399365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 9253854 - 9253813
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaa 85  Q
    |||||||||||||| |||||| |||| |||||||||||||||    
T  9253854 actaaaagttgaaggaaaattttagaggtattaaaacgaaaa 9253813  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 42163531 - 42163486
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||| |||||| |||| | |||||||||||||||||    
T  42163531 actaaaagttgaaggaaaattttagagggattaaaacgaaaagttg 42163486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 45339247 - 45339296
Alignment:
Q  45 ctaaaagttgaagaaaaattatagaagtattaaaacgaaaagttggaata 94  Q
    ||||||||||||| |||||| |||| | | ||||||||||||||||||||    
T  45339247 ctaaaagttgaaggaaaattttagagggactaaaacgaaaagttggaata 45339296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 52252682 - 52252637
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    ||||||| ||||||||||||| |||| | |||||||||||||||||    
T  52252682 actaaaaattgaagaaaaattttagagggattaaaacgaaaagttg 52252637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 8398993 - 8398933
Alignment:
Q  30 aaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||| |||| |||||||||||||| |||||| | || | | ||||||||||||||||    
T  8398993 aaaactttacagggactaaaagttgaaggaaaattttggaggaactaaaacgaaaagttgg 8398933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 17551922 - 17551966
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagtt 88  Q
    |||||||||||||| |||||| |||| | ||||||||||||||||    
T  17551922 actaaaagttgaaggaaaattttagaggaattaaaacgaaaagtt 17551966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 31184937 - 31184981
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagtt 88  Q
    |||||||||||||| |||||| |||| | ||||||||||||||||    
T  31184937 actaaaagttgaaggaaaattttagagggattaaaacgaaaagtt 31184981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 49083734 - 49083782
Alignment:
Q  40 aggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagtt 88  Q
    |||||||||||||||||| |||||| |||||| | | ||||||||||||    
T  49083734 aggaactaaaagttgaaggaaaattttagaaggactgaaacgaaaagtt 49083782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 38203915 - 38203964
Alignment:
Q  40 aggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||||||| |||||| |||||| | |||||||||||||||    
T  38203915 aggaactaaaagttgaaggaaaattttagaaggactaaaacgaaaagttg 38203964  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 4565810 - 4565856
Alignment:
Q  42 gaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagtt 88  Q
    |||||||||||||||| |||||| |||||| | ||||||||||||||    
T  4565810 gaactaaaagttgaaggaaaattttagaaggactaaaacgaaaagtt 4565856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 6197545 - 6197595
Alignment:
Q  40 aggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||||||||| |||||| |||| | | ||||||||||||||||    
T  6197545 aggaactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 6197595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 6732118 - 6732176
Alignment:
Q  30 aaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagtt 88  Q
    ||||||||  ||| |||||||||||||| |||||| |||| | ||||||||||||||||    
T  6732118 aaaactttatagggactaaaagttgaaggaaaattttagagggattaaaacgaaaagtt 6732176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 10362127 - 10362081
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||||    
T  10362127 actaaaagttgaagaaaaattttagagggactaaaacgaaaagttgg 10362081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 5192238 - 5192283
Alignment:
Q  44 actaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||| |||||| || ||| |||||||||||||||||    
T  5192238 actaaaagttgaaggaaaattttacaaggattaaaacgaaaagttg 5192283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 12565551 - 12565486
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||| |||| |||| ||| |||||||||||||| |||||| |||| | | ||||||||||||||||    
T  12565551 gatggaaaattttttagggactaaaagttgaaggaaaattttagagggactaaaacgaaaagttgg 12565486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 27306111 - 27306046
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    ||||||||| |||| ||| |||||||||||||| | |||| |||| | | ||||||||||||||||    
T  27306111 gatgaaaaaatttttagggactaaaagttgaaggataattttagagggactaaaacgaaaagttgg 27306046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 30911423 - 30911463
Alignment:
Q  47 aaaagttgaagaaaaattatagaagtattaaaacgaaaagtt 88  Q
    |||||||||||||||||| |||||| ||||||||||||||||    
T  30911423 aaaagttgaagaaaaatt-tagaaggattaaaacgaaaagtt 30911463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 35808648 - 35808697
Alignment:
Q  40 aggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttg 89  Q
    |||||||||||||||||| |||||| |||| | | |||||||||||||||    
T  35808648 aggaactaaaagttgaaggaaaattttagagggactaaaacgaaaagttg 35808697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 41246024 - 41246088
Alignment:
Q  25 gatgaaaaacttttcaggaactaaaagttgaagaaaaattatagaagtattaaaacgaaaagttgg 90  Q
    |||||||||||||| |||| |||||||||||||||||||| || |   | ||||||||||||||||    
T  41246024 gatgaaaaacttttgagga-ctaaaagttgaagaaaaattttaaagaaactaaaacgaaaagttgg 41246088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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