View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_high_8 (Length: 565)
Name: NF3550_high_8
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 11 - 548
Target Start/End: Original strand, 12799540 - 12800083
Alignment:
| Q |
11 |
cacagaatggacacacatagaatttcaagaaaaaacaccgacaatgatgtttagagatccaactatttcccttttaataaaatcgattacaaacatattt |
110 |
Q |
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| T |
12799540 |
cacagaatggacacacatagaatttcaagaaaaaacaccgacaatgatgtttagagatccaactatttcccttttaataaaatcgattacaaacatattt |
12799639 |
T |
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| Q |
111 |
atacctttttt--aaaaaattggataatcccatacaaaattataaagattaatctcacaagtcgaatagtatcatgtacgagacaaagacgattttccac |
208 |
Q |
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| T |
12799640 |
atacctttttttaaaaaaattggataatctcatacacaattataaagattaatctcacaagtcgaatagtatcatgtacaagacaaagacgatttcccac |
12799739 |
T |
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| Q |
209 |
aattattaaccctataaactgtcagttggactcaaacgaaaaattcaacttttataaattatagaacctaatatattttaatggtgaaattatccactta |
308 |
Q |
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| T |
12799740 |
aactattaatcctacaaactgttagttggactcgaacggaaaattcaacttttataaattatagaacctaatatattttaatggtgaaattatccactta |
12799839 |
T |
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| Q |
309 |
atactcaaatatttttcacatcaagaagatttaaatcctattatattaaactaaaagaaaacaaaactatgtccaacaatttgttaactcactcaaccac |
408 |
Q |
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| T |
12799840 |
atactcaaatatttttcacatcaagaagatttaaatcctattatattaaactaaaagaaaacaaaactatgtccaacaatttgttaactcactcaaccac |
12799939 |
T |
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| Q |
409 |
taaaactaaccttaaatagaagccaaagaaatcacc------ttctcattctcatttcccatttctcacacttctcatttctcaaattccacaccatacc |
502 |
Q |
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| T |
12799940 |
taaaactaaccttaaatagaagccaaagaaatcaccttctcattctcattctcatttcccatttct--cacttctcatttctcaaattccactccatacc |
12800037 |
T |
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| Q |
503 |
cttcacttccactcctcaaaaaatgagaaaaaccataaccattgtt |
548 |
Q |
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| T |
12800038 |
cttcacttccactcctcaaaaaatgagaaaaaccataaccattgtt |
12800083 |
T |
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