View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_low_10 (Length: 512)
Name: NF3550_low_10
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 6 - 255
Target Start/End: Complemental strand, 3121847 - 3121598
Alignment:
| Q |
6 |
agtaggtgcaaattcatcaagctcttcctcaacagccccagcgctcacagccttctgtacggtagctgcgacatccaccaccccaaccgtcgtagcagag |
105 |
Q |
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| T |
3121847 |
agtaggtgcaaattcatcaagctcttcctcaacagccccagcgctcacagccttctgtacggtagctgcgacatccgccactccaaccgtcgtagcagag |
3121748 |
T |
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| Q |
106 |
ccggtcctaagatttaataagaaaacgtttaaggaccaatacctctatttctaaatatataagcaactatagattgattatttttatttttgattagatg |
205 |
Q |
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| T |
3121747 |
ccggtcctaagatttaataagaaaacgtttaaggaccaataactctatttctaaatatataagcaactatagattgattatttttatttttgattagatg |
3121648 |
T |
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| Q |
206 |
gtaactataaaaacatattttcatgtgtttatgattattaaaatataccc |
255 |
Q |
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| T |
3121647 |
gtaactataaaaacatattttcatgtgtttatgattattaaaatataccc |
3121598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 349 - 495
Target Start/End: Complemental strand, 3121501 - 3121355
Alignment:
| Q |
349 |
catgattagatctagttttaatcacttttcctcaagcaatcctccaaaagacagtgacacaaaatataaactaaatttaaaacatgaaaatcaaactcac |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3121501 |
catgattagatctagttttaatcacttttcctcaagcaatcctccaaaagacagtgacacaaaatataaactaaatttaaaacatgaaaatcaaactcac |
3121402 |
T |
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| Q |
449 |
aggtcggaagggtcctcgtggtactctatcaaatagacggtgccacc |
495 |
Q |
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| T |
3121401 |
aggtcggaagggtcctcgtggtactctatcaaatagacggtgccacc |
3121355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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