View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3550_low_13 (Length: 489)

Name: NF3550_low_13
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3550_low_13
NF3550_low_13
[»] scaffold0002 (2 HSPs)
scaffold0002 (202-483)||(343960-344241)
scaffold0002 (7-125)||(343766-343882)
[»] chr3 (16 HSPs)
chr3 (305-478)||(33231218-33231392)
chr3 (305-478)||(44471321-44471494)
chr3 (313-462)||(30554261-30554411)
chr3 (305-478)||(44681704-44681877)
chr3 (305-478)||(779207-779379)
chr3 (305-478)||(46892879-46893053)
chr3 (362-478)||(54246740-54246856)
chr3 (396-478)||(44285847-44285929)
chr3 (313-476)||(23659692-23659851)
chr3 (396-478)||(26757904-26757986)
chr3 (424-478)||(28550747-28550801)
chr3 (35-91)||(49841700-49841756)
chr3 (202-261)||(28551055-28551114)
chr3 (435-478)||(11503159-11503202)
chr3 (279-308)||(46893072-46893101)
chr3 (276-308)||(30553768-30553800)
[»] chr6 (10 HSPs)
chr6 (305-478)||(11846544-11846716)
chr6 (313-476)||(26186421-26186586)
chr6 (305-478)||(11971714-11971887)
chr6 (305-479)||(7176201-7176375)
chr6 (314-478)||(23300721-23300884)
chr6 (370-478)||(2453882-2453989)
chr6 (305-478)||(9827041-9827216)
chr6 (202-308)||(11971906-11972015)
chr6 (313-449)||(32613619-32613756)
chr6 (396-481)||(7551202-7551288)
[»] chr8 (10 HSPs)
chr8 (305-444)||(3767368-3767508)
chr8 (305-478)||(20860088-20860262)
chr8 (317-478)||(32322104-32322265)
chr8 (305-483)||(9505327-9505506)
chr8 (313-456)||(17913067-17913212)
chr8 (202-261)||(3554999-3555058)
chr8 (398-483)||(40434766-40434852)
chr8 (35-83)||(39953416-39953464)
chr8 (29-91)||(10080051-10080113)
chr8 (279-308)||(32322296-32322325)
[»] chr2 (12 HSPs)
chr2 (350-478)||(5526525-5526653)
chr2 (305-483)||(37630622-37630804)
chr2 (306-478)||(10722101-10722274)
chr2 (313-483)||(33036758-33036929)
chr2 (305-478)||(3689816-3689989)
chr2 (305-473)||(30906548-30906717)
chr2 (313-479)||(44018664-44018831)
chr2 (309-471)||(3919581-3919744)
chr2 (335-478)||(22847946-22848089)
chr2 (305-373)||(4241097-4241166)
chr2 (398-483)||(33221466-33221552)
chr2 (394-442)||(27866904-27866952)
[»] chr1 (9 HSPs)
chr1 (305-478)||(32678165-32678339)
chr1 (305-476)||(8414258-8414430)
chr1 (398-475)||(11911890-11911967)
chr1 (345-478)||(27320229-27320363)
chr1 (398-460)||(50574454-50574516)
chr1 (306-478)||(17530908-17531081)
chr1 (40-97)||(50846652-50846709)
chr1 (29-85)||(6573408-6573464)
chr1 (35-91)||(8796291-8796347)
[»] chr5 (6 HSPs)
chr5 (305-475)||(7239002-7239174)
chr5 (305-475)||(7244178-7244350)
chr5 (305-478)||(1497902-1498076)
chr5 (372-478)||(17770516-17770622)
chr5 (411-478)||(20665672-20665739)
chr5 (430-482)||(20665539-20665591)
[»] chr7 (10 HSPs)
chr7 (313-478)||(12471453-12471616)
chr7 (313-478)||(25544923-25545089)
chr7 (317-478)||(39571521-39571682)
chr7 (397-478)||(12012739-12012820)
chr7 (306-458)||(48070934-48071085)
chr7 (313-463)||(12470739-12470891)
chr7 (314-444)||(2500834-2500964)
chr7 (305-476)||(31136445-31136615)
chr7 (435-476)||(30396508-30396549)
chr7 (438-478)||(2197513-2197553)
[»] chr4 (6 HSPs)
chr4 (305-481)||(53392853-53393031)
chr4 (313-478)||(19681785-19681951)
chr4 (305-478)||(42141543-42141713)
chr4 (407-478)||(13207200-13207271)
chr4 (35-91)||(28351641-28351697)
chr4 (35-91)||(47147455-47147511)
[»] scaffold1194 (1 HSPs)
scaffold1194 (345-478)||(2296-2429)
[»] scaffold0590 (1 HSPs)
scaffold0590 (305-483)||(8460-8639)
[»] scaffold0564 (3 HSPs)
scaffold0564 (407-477)||(6607-6677)
scaffold0564 (202-261)||(6835-6894)
scaffold0564 (305-382)||(6690-6767)


Alignment Details
Target: scaffold0002 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 202 - 483
Target Start/End: Original strand, 343960 - 344241
Alignment:
Q  202 aaaaagaacccaaaccaaactagtcggtatagatcagttcggtagatcgatttgtttgaatacaattnnnnnnntctatattttcacaaatttgtttttc 301  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  343960 aaaaagaacccaaaccaaactagtcggtttagatcagttcggttgatcgatttgtttgaatacaattaaaaaaatctatattttcacaaatttgtttttc 344059  T
Q  302 atgcatagaaatttgttttccatgttctctgtttttaaaatattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgag 401  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  344060 atgcatagaaatttgttttccatgttctctatttttaaaatattttgaataactaacatgaaaaaactaacaagagatggatgatcctagatgcggtgag 344159  T
Q  402 gaacaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatgatgatg 483  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  344160 gaacgatgggttaggtgtgactggcggctagtgttcttttttagtagaaacgaaatagagtatgagtgatgagatgatgatg 344241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 343766 - 343882
Alignment:
Q  7 atcttgagagaaagacgtatatattttatagtaaggagagtaaatcagatgaagggtaaccagatcactagaggtagagaaagacttggaattcggggtg 106  Q
    ||||| ||||||||||  |||||||||||||| | |||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  343766 atctttagagaaagac--atatattttatagttaagagagtaaatcagatgaagggtaatcagatcactagatgtagagaaagacttcgaattcggggtg 343863  T
Q  107 taacggtttggtttagatc 125  Q
    |||||||||||||| ||||    
T  343864 taacggtttggtttggatc 343882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 305 - 478
Target Start/End: Original strand, 33231218 - 33231392
Alignment:
Q  305 catagaaatttgttttccatgttctctgtttttaaaat-attttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagga 403  Q
    ||||||| ||| ||||| ||||||||||||||| |||| | |||| |||||||| || ||||||||||||||| ||||| ||||| ||  | ||||||||    
T  33231218 catagaactttattttctatgttctctgtttttcaaattactttgtataactaacataaaaaaactaacaagagatggacgatcccagcggtggtgagga 33231317  T
Q  404 acaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    |||||||||||||||||||| ||||||||| ||||||||||  |||||||||||||||| |||| ||||||||||    
T  33231318 acaatgggttaggtgtgactagcggctagtattcttttttaccagaaacgaaatagagtgtgagcgatgagatga 33231392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 305 - 478
Target Start/End: Complemental strand, 44471494 - 44471321
Alignment:
Q  305 catagaaatttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagga 403  Q
    ||||||| ||||||||||||||||||||||||| ||| || |||| |||||||| |||||||||||||||||| ||||| ||||| ||  ||  ||||||    
T  44471494 catagaactttgttttccatgttctctgtttttcaaactactttgtataactaacatgaaaaaactaacaagagatggacgatcccagcggctctgagga 44471395  T
Q  404 acaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    || |||||||||| |||||| ||||||||||||  |||||| ||| ||||||||||||| ||||||||| |||||    
T  44471394 acgatgggttaggggtgactagcggctagtgtt-atttttagtagtaacgaaatagagtgtgagtgatgtgatga 44471321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 313 - 462
Target Start/End: Original strand, 30554261 - 30554411
Alignment:
Q  313 tttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgaggaacaatggg 411  Q
    ||||||||||||||||||||||||| ||| || |||  |||||||| |||||||||||||||||| ||||||| ||| ||  |||||||||||| |||||    
T  30554261 tttgttttccatgttctctgttttttaaactactttatataactaacatgaaaaaactaacaagagatggatgctcccagcggcggtgaggaacgatggg 30554360  T
Q  412 ttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagt 462  Q
    |||||||| |||| ||  ||||||||||||||| || ||||||||||||||    
T  30554361 ttaggtgtaactgacgattagtgttcttttttagtataaacgaaatagagt 30554411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 305 - 478
Target Start/End: Original strand, 44681704 - 44681877
Alignment:
Q  305 catagaaatttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagga 403  Q
    ||||||| ||||||||||||||||||||||||| ||| || |||  |||||||| || ||||| ||||||||| ||||||||||| |    || ||||||    
T  44681704 catagaactttgttttccatgttctctgtttttcaaactactttctataactaacatcaaaaa-ctaacaagagatggatgatcccaacgacgatgagga 44681802  T
Q  404 acaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    || || ||||||||||||||||||| ||| ||||||||||| || |||||||||||| |||||||||||||||||    
T  44681803 acgattggttaggtgtgactggcggatagcgttcttttttagtataaacgaaatagattatgagtgatgagatga 44681877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 305 - 478
Target Start/End: Original strand, 779207 - 779379
Alignment:
Q  305 catagaaatttgttttccatgttctctgtttttaaaat--attttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagg 402  Q
    ||||||| |||||||| |||||||||| ||||| |||   |||||| |||||||| |||||||  | ||||||| |||||  |||| ||  |||||||||    
T  779207 catagaactttgtttttcatgttctctatttttcaaactaattttgtataactaacatgaaaattc-aacaagagatggacaatcccagcggcggtgagg 779305  T
Q  403 aacaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    ||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||  |||||||||||||||    
T  779306 aacgatgggttaggtgtgactagcggctagtgttcttttctattagaaacgaaatagag--tgagtgatgagatga 779379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 305 - 478
Target Start/End: Complemental strand, 46893053 - 46892879
Alignment:
Q  305 catagaaatttgttttccatgttctctgttttt-aaaatattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagga 403  Q
    ||||||| ||||||||||||||||||||||||| ||| || |||| |||||||| |||||||||||||||||| ||||| ||||| |    |  ||| ||    
T  46893053 catagaactttgttttccatgttctctgtttttcaaactactttgtataactaacatgaaaaaactaacaagagatggacgatcccaacgacaatgaaga 46892954  T
Q  404 acaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    || ||| |||||||||||||| | | ||||||||||||||| ||||||||||||||| | |||||| ||||||||    
T  46892953 acgatgagttaggtgtgactgacagatagtgttcttttttagtagaaacgaaatagattgtgagtggtgagatga 46892879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 362 - 478
Target Start/End: Complemental strand, 54246856 - 54246740
Alignment:
Q  362 aaaaaactaacaagaaatggatgatcctagatgcggtgaggaacaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagag 461  Q
    ||||||| ||||||| ||||||||||| |   |||||||||||||||||||||| ||||||| || | || |||||||||| | ||||||||||||| ||    
T  54246856 aaaaaaccaacaagagatggatgatcccaacggcggtgaggaacaatgggttagatgtgacttgcagataatgttctttttcagtagaaacgaaatatag 54246757  T
Q  462 tatgagtgatgagatga 478  Q
    | ||| |||||||||||    
T  54246756 tgtgactgatgagatga 54246740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 396 - 478
Target Start/End: Complemental strand, 44285929 - 44285847
Alignment:
Q  396 ggtgaggaacaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    |||||||||| ||||||||||||| | | ||||||| |||||||||||| ||||||||||||||||| ||| |||||||||||    
T  44285929 ggtgaggaacgatgggttaggtgtaagtagcggctaatgttcttttttagtagaaacgaaatagagtgtgaatgatgagatga 44285847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 476
Target Start/End: Complemental strand, 23659851 - 23659692
Alignment:
Q  313 tttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgaggaacaatggg 411  Q
    ||||||||||| ||||||||||||| ||| || |||| ||||||||||||||||||||||||||| |||||  |||| ||  ||  ||| |||| ||| |    
T  23659851 tttgttttccacgttctctgtttttcaaactactttgtataactaatatgaaaaaactaacaagagatggacaatcccagcagcaatgaagaacgatgag 23659752  T
Q  412 ttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagat 476  Q
    ||||||||||||| | ||||| ||||||    | ||||||||||||||| |  ||||||||||||    
T  23659751 ttaggtgtgactg-cagctagagttctt----agtagaaacgaaatagactgcgagtgatgagat 23659692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 478
Target Start/End: Complemental strand, 26757986 - 26757904
Alignment:
Q  396 ggtgaggaacaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    |||||||||| || | ||| |||||||||||  ||||| |||||||||| ||||||||||||||||| || ||||||||||||    
T  26757986 ggtgaggaacgatagattatgtgtgactggcatctagttttcttttttagtagaaacgaaatagagtgtgggtgatgagatga 26757904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 424 - 478
Target Start/End: Complemental strand, 28550801 - 28550747
Alignment:
Q  424 ggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    ||||||||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  28550801 ggcggctagtgttcttttttaatagaaacgaaatagaatgtgagtgatgagatga 28550747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 49841700 - 49841756
Alignment:
Q  35 tagtaaggagagtaaatcagatgaagggtaaccagatcactagaggtagagaaagac 91  Q
    ||||||||||||||||||||||||||||||  || || ||||||||||||| |||||    
T  49841700 tagtaaggagagtaaatcagatgaagggtagtcaaattactagaggtagaggaagac 49841756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 28551114 - 28551055
Alignment:
Q  202 aaaaagaacccaaaccaaactagtcggtatagatcagttcggtagatcgatttgtttgaa 261  Q
    |||||||| |||||||||| |||||||| | |||| ||||||| ||||||||||||||||    
T  28551114 aaaaagaaaccaaaccaaattagtcggtttggatcggttcggttgatcgatttgtttgaa 28551055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 478
Target Start/End: Original strand, 11503159 - 11503202
Alignment:
Q  435 ttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    |||||||||| |||||| |||||||||| |||||||||||||||    
T  11503159 ttcttttttagtagaaatgaaatagagtctgagtgatgagatga 11503202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 308
Target Start/End: Complemental strand, 46893101 - 46893072
Alignment:
Q  279 atattttcacaaatttgtttttcatgcata 308  Q
    ||||||||||||||||||||||||||||||    
T  46893101 atattttcacaaatttgtttttcatgcata 46893072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 30553768 - 30553800
Alignment:
Q  276 tctatattttcacaaatttgtttttcatgcata 308  Q
    ||||||||||||||||||||| |||||||||||    
T  30553768 tctatattttcacaaatttgtatttcatgcata 30553800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 305 - 478
Target Start/End: Complemental strand, 11846716 - 11846544
Alignment:
Q  305 catagaaatttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagga 403  Q
    ||||||| |||||||| |||||||||||||||| ||| ||||||| |||||||| |||||||||||||| |||  ||| ||||| |||  ||| |||| |    
T  11846716 catagaactttgtttttcatgttctctgtttttcaaactattttgtataactaacatgaaaaaactaacgaga--tgggtgatcttagcggcgatgagca 11846619  T
Q  404 acaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    || |||||||||||||||||| |||||||||||| |||||| |||||||||||||||   |||| ||||||||||    
T  11846618 acgatgggttaggtgtgactgacggctagtgttcctttttagtagaaacgaaatagaccgtgagcgatgagatga 11846544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 313 - 476
Target Start/End: Original strand, 26186421 - 26186586
Alignment:
Q  313 tttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgaggaacaatggg 411  Q
    |||||||| | |||| ||||||||| ||| || |||| |||| ||| |||||||||||||||||| ||||||||||| |   ||| ||||||||||||||    
T  26186421 tttgttttacgtgttatctgtttttcaaactactttgtataaataacatgaaaaaactaacaagagatggatgatcccaacggcgatgaggaacaatggg 26186520  T
Q  412 ttaggt-gtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagat 476  Q
    |||||| ||| |  || ||||||||||||||||| ||||||| ||||||||| |||||||||||||    
T  26186521 ttaggtggtggcatgcagctagtgttcttttttagtagaaacaaaatagagtgtgagtgatgagat 26186586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 478
Target Start/End: Complemental strand, 11971887 - 11971714
Alignment:
Q  305 catagaaatttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagga 403  Q
    ||||||| |||||||| |||||||||||||||| ||| || |||| |||||||| |||||||||||||||||| ||||  ||||  ||| ||| | |  |    
T  11971887 catagaactttgtttttcatgttctctgtttttcaaactactttgtataactaacatgaaaaaactaacaagagatgggcgatctcagaggcgat-aaca 11971789  T
Q  404 acaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    |||||| ||||| |||||| | ||||||||||||||||||| |||||| || |||||   |||| ||||||||||    
T  11971788 acaatgagttagatgtgaccgacggctagtgttcttttttagtagaaatgatatagaccgtgagggatgagatga 11971714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 479
Target Start/End: Original strand, 7176201 - 7176375
Alignment:
Q  305 catagaaatttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagga 403  Q
    ||||||| |||||||||||||| |||||||||| ||| || |||  |||||||| |||||||||||||||||  ||| | ||| | |   | | ||||||    
T  7176201 catagaactttgttttccatgtactctgtttttcaaactactttttataactaacatgaaaaaactaacaagtgatgaacgattccaacggtgatgagga 7176300  T
Q  404 acaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatgat 479  Q
     || ||||||||||||||||| | |||||||||| |||| | |||||||||||| || | ||||||||||||||||    
T  7176301 gcagtgggttaggtgtgactgacagctagtgttc-ttttaaatagaaacgaaatggactgtgagtgatgagatgat 7176375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 314 - 478
Target Start/End: Complemental strand, 23300884 - 23300721
Alignment:
Q  314 ttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgaggaacaatgggt 412  Q
    ||||||| |||||||||| || || ||| || |||| |||||||| |||| ||||||||||||| ||||| ||||| ||   || ||||||   ||||||    
T  23300884 ttgtttttcatgttctctattgttcaaactactttgtataactaacatgataaaactaacaagagatggacgatcccagtgacgatgaggag--atgggt 23300787  T
Q  413 taggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    ||||||||| | ||| ||||||||||||| || | ||||||||||||| | |||||||||||||||    
T  23300786 taggtgtgagtagcgactagtgttcttttatagtggaaacgaaatagaatgtgagtgatgagatga 23300721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 370 - 478
Target Start/End: Original strand, 2453882 - 2453989
Alignment:
Q  370 aacaagaaatggatgatcctagatgcggtgaggaacaatgggttaggtgtgactggcggctagtgttcttt-tttattagaaacgaaatagagtatgagt 468  Q
    ||||||| ||||||||||| |   ||||||||||||||||||||| |||||||| ||||  | |||||||| || | ||||||||||||||||| |||||    
T  2453882 aacaagagatggatgatcccaacggcggtgaggaacaatgggttatgtgtgacttgcgg--aatgttctttgttcagtagaaacgaaatagagtgtgagt 2453979  T
Q  469 gatgagatga 478  Q
    ||||||||||    
T  2453980 gatgagatga 2453989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 478
Target Start/End: Complemental strand, 9827216 - 9827041
Alignment:
Q  305 catagaaatttgttttccatgttctctgtttttaa-aatattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagga 403  Q
    ||||||| ||||||||||||||||||  ||||| | |||| |||| ||||||||  ||||||||||||||||| ||   | |||| |    | |||| ||    
T  9827216 catagaactttgttttccatgttctccatttttcataatactttgtataactaacctgaaaaaactaacaagagat---taatcccaacgactgtgacga 9827120  T
Q  404 acaatgggttaggtgtga----ctggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    || |||| ||||||||||    ||| || |||||||| |||||||  |||||||||||||| |||||||||||||||||    
T  9827119 acgatggattaggtgtgagtgactgacgcctagtgttgttttttagaagaaacgaaatagactatgagtgatgagatga 9827041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 11972015 - 11971906
Alignment:
Q  202 aaaaagaacccaaaccaaactagtcggtatagatcagttcggtagatcgatttgtttg--aatacaatt-nnnnnnntctatattttcacaaatttgttt 298  Q
    ||||||||  |||||||||||| ||||| | |||||||||||| ||||| ||||||||  |||||||||        | ||||||||||||||||||| |    
T  11972015 aaaaagaaatcaaaccaaactaatcggtttggatcagttcggttgatcggtttgtttgaaaatacaattaaaaaaaatttatattttcacaaatttgtat 11971916  T
Q  299 ttcatgcata 308  Q
    ||||||||||    
T  11971915 ttcatgcata 11971906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 449
Target Start/End: Original strand, 32613619 - 32613756
Alignment:
Q  313 tttgttttccatgttctctgttttt-aaaatattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgaggaacaatggg 411  Q
    ||||||||||||||||||| ||||| ||| || |||  |||| ||| |||||||||||||||| | ||||| ||||| |     ||| || ||| |||      
T  32613619 tttgttttccatgttctctatttttcaaactactttatataattaacatgaaaaaactaacaatagatggacgatcccaacgatggttagaaacgatgat 32613718  T
Q  412 ttaggtgtgactggcggctagtgttcttttttattaga 449  Q
    ||||||||||||| ||||||||||| ||||||| ||||    
T  32613719 ttaggtgtgactgacggctagtgttattttttagtaga 32613756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 481
Target Start/End: Original strand, 7551202 - 7551288
Alignment:
Q  396 ggtgaggaacaatgggttaggtgtgactggcggctagtgtt-cttttttattagaaacgaaatagagtatgagtgatgagatgatga 481  Q
    |||||||||| ||| |||||||||   |||||||||  ||| || |||||  |||||  ||||||||||||||||||||||||||||    
T  7551202 ggtgaggaacgatgagttaggtgtagttggcggctaaggtttctattttagaagaaataaaatagagtatgagtgatgagatgatga 7551288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 305 - 444
Target Start/End: Original strand, 3767368 - 3767508
Alignment:
Q  305 catagaaatttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagga 403  Q
    ||||||| |||||||||  |||||||||||||| ||| ||||||| |||||||| |||||||||||||||||| ||||| ||||| ||  ||| ||||||    
T  3767368 catagaactttgttttctgtgttctctgtttttcaaactattttgtataactaacatgaaaaaactaacaagagatggacgatcccagtggcgatgagga 3767467  T
Q  404 acaatgggttaggtgtgactggcggctagtgttctttttta 444  Q
    || ||||||||||||||||||  ||||||||||||||||||    
T  3767468 acgatgggttaggtgtgactgaaggctagtgttctttttta 3767508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 305 - 478
Target Start/End: Original strand, 20860088 - 20860262
Alignment:
Q  305 catagaaatttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagga 403  Q
    ||||||| ||||||||||||||||| ||||||| ||| || |||| |||||||| ||||||||||||||| || ||||| ||||| ||  | | ||||||    
T  20860088 catagaactttgttttccatgttctttgtttttcaaactactttgtataactaacatgaaaaaactaacacgagatggacgatcccagcggagatgagga 20860187  T
Q  404 acaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    || |||||||||||   |||| ||||||||||||||||||| || ||| |||||||||| || ||||| ||||||    
T  20860188 acgatgggttaggttaaactgacggctagtgttcttttttagtataaaagaaatagagtgtgggtgattagatga 20860262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 317 - 478
Target Start/End: Complemental strand, 32322265 - 32322104
Alignment:
Q  317 ttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgaggaacaatgggttag 415  Q
    ||||||| ||||||||||||| ||| || |||| |||||||| ||||||||| |||||||| ||||| |||||||   ||| |||||||||||||||||     
T  32322265 ttttccacgttctctgtttttcaaactactttgtataactaacatgaaaaaaataacaagagatggacgatcctattggcgatgaggaacaatgggttat 32322166  T
Q  416 gtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    || |||||||||| ||||||||| ||||| |||||  |||||||| | |||||||||| ||||    
T  32322165 gtatgactggcggttagtgttct-ttttagtagaattgaaatagactgtgagtgatgacatga 32322104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 305 - 483
Target Start/End: Complemental strand, 9505506 - 9505327
Alignment:
Q  305 catagaaatttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagga 403  Q
    ||||||| |||||||| |||||||| ||||||| ||| || |||| |||| ||| | ||||||||||||| || ||  | ||||| |    |||||||||    
T  9505506 catagaactttgtttttcatgttctatgtttttcaaactactttgtataattaacaggaaaaaactaacatgagataaaggatcccatcgacggtgagga 9505407  T
Q  404 acaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatgatgatg 483  Q
    || || | ||||||||||||| || |||||||| ||||||| || || ||||||||||| |||| |||||||| ||||||    
T  9505406 acgatagattaggtgtgactgacgtctagtgttgttttttagtaaaaccgaaatagagtgtgagggatgagatcatgatg 9505327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 456
Target Start/End: Complemental strand, 17913212 - 17913067
Alignment:
Q  313 tttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaact-aacaagaaatggatgatcctagatgcggtgaggaacaatgg 410  Q
    ||||||||||||||||||| ||||| ||| || |||| |||||||| ||||||||| | || |||| ||| | ||||| |    ||  ||||||||||||    
T  17913212 tttgttttccatgttctctatttttcaaactactttgtataactaacatgaaaaaaattaataagagatgaacgatcccaacaacgacgaggaacaatgg 17913113  T
Q  411 gttaggtgtgactggcggctagtgttcttttttattagaaacgaaa 456  Q
    |||| ||||||| | | ||||||||||||||||  |||||||||||    
T  17913112 gttaagtgtgaccgactgctagtgttcttttttcgtagaaacgaaa 17913067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 3554999 - 3555058
Alignment:
Q  202 aaaaagaacccaaaccaaactagtcggtatagatcagttcggtagatcgatttgtttgaa 261  Q
    |||||||| ||||||||||||||||||| | |||| ||||||| ||||| ||||||||||    
T  3554999 aaaaagaaaccaaaccaaactagtcggtttggatcggttcggttgatcggtttgtttgaa 3555058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 40434766 - 40434852
Alignment:
Q  398 tgaggaacaatgggttaggtgtgactggcggctagtgttc-ttttttattagaaacgaaatagagtatgagtgatgagatgatgatg 483  Q
    |||||||  ||||||||| |||| |||| || ||| |||  ||||||| ||||||  ||||||||||||||||||||||||||||||    
T  40434766 tgaggaattatgggttagatgtggctggtggttagggtttattttttaatagaaataaaatagagtatgagtgatgagatgatgatg 40434852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 39953464 - 39953416
Alignment:
Q  35 tagtaaggagagtaaatcagatgaagggtaaccagatcactagaggtag 83  Q
    |||||||||||||| ||||||||||||  || |||||||||||||||||    
T  39953464 tagtaaggagagtagatcagatgaaggcgaatcagatcactagaggtag 39953416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 10080113 - 10080051
Alignment:
Q  29 attttatagtaaggagagtaaatcagatgaagggtaaccagatcactagaggtagagaaagac 91  Q
    ||||| |||||||||||||| |||| |||||||| |  || |||||||||||||||| |||||    
T  10080113 attttgtagtaaggagagtagatcaaatgaaggggagtcaaatcactagaggtagaggaagac 10080051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 308
Target Start/End: Complemental strand, 32322325 - 32322296
Alignment:
Q  279 atattttcacaaatttgtttttcatgcata 308  Q
    ||||||||||||||||||||||||||||||    
T  32322325 atattttcacaaatttgtttttcatgcata 32322296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 350 - 478
Target Start/End: Complemental strand, 5526653 - 5526525
Alignment:
Q  350 ataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgaggaacaatgggttaggtgtgactggcggctagtgttcttttttattaga 449  Q
    |||||||| |||||||||||||||||| ||| | ||||||||  |||||||||||| |||||||||   |||||||||||||||||||||||||| | ||    
T  5526653 ataactaacatgaaaaaactaacaagatatgaacgatcctagcggcggtgaggaacgatgggttagacatgactggcggctagtgttcttttttaattga 5526554  T
Q  450 aacgaaatagagtatgagtgatgagatga 478  Q
    ||||||||||||  |||||||||||||||    
T  5526553 aacgaaatagagcgtgagtgatgagatga 5526525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 305 - 483
Target Start/End: Complemental strand, 37630804 - 37630622
Alignment:
Q  305 catagaaatttgttttccatgttctctgttttt-aaaatattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagga 403  Q
    ||||||| ||||||||| ||||||||||||||| ||| || |||| |||||||| |||||||||||||||||| ||| | ||||| |   ||| ||||||    
T  37630804 catagaactttgttttcaatgttctctgtttttcaaactactttgtataactaacatgaaaaaactaacaagagatgaacgatcccaacagcgatgagga 37630705  T
Q  404 ac---aatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatgatgatg 483  Q
    ||    |||||||| |||||||||| |||||||||||||||||| ||||||| ||||||| | |||||||||||| |||||||    
T  37630704 acgatgatgggttatgtgtgactggtggctagtgttcttttttagtagaaacaaaatagactttgagtgatgagacgatgatg 37630622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 306 - 478
Target Start/End: Complemental strand, 10722274 - 10722101
Alignment:
Q  306 atagaaatttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgaggaa 404  Q
    |||||| ||||||||||||||||||||||||  ||| ||  ||| |||||||| ||||||||||||| |||| ||||| |||||| || |||  | ||||    
T  10722274 atagaattttgttttccatgttctctgttttacaaactacattgtataactaacatgaaaaaactaataagatatggaagatccttgaggcgaagtggaa 10722175  T
Q  405 caatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    | || |||||||||||||  |||||||||||||||||||| |||||||||||||||   ||||| |||||||||    
T  10722174 cgataggttaggtgtgacctgcggctagtgttcttttttagtagaaacgaaatagaccgtgagtaatgagatga 10722101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 313 - 483
Target Start/End: Original strand, 33036758 - 33036929
Alignment:
Q  313 tttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgaggaacaatggg 411  Q
    |||||||||||| |||| || |||| ||| || |||| |||||||| |||||||||||||||| | ||||| ||||| ||   |||||| |||  |||||    
T  33036758 tttgttttccattttctttgcttttcaaactagtttgtataactaacatgaaaaaactaacaaaagatggacgatcccagcaacggtgaagaatgatggg 33036857  T
Q  412 ttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatgatgatg 483  Q
    |||||||||||  |||||||||||| ||||||| ||||||| ||||| ||| | ||||||||||||||||||    
T  33036858 ttaggtgtgaccagcggctagtgttattttttagtagaaacaaaataaagtgtaagtgatgagatgatgatg 33036929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 305 - 478
Target Start/End: Original strand, 3689816 - 3689989
Alignment:
Q  305 catagaaatttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagga 403  Q
    ||||||| |||||||| |||||||| ||||||| ||| || |||  |||||||| |||||||||||||||||| ||||||||||| |   ||| ||||||    
T  3689816 catagaactttgtttttcatgttctatgtttttcaaactactttatataactaacatgaaaaaactaacaagagatggatgatcccatcagcgatgagga 3689915  T
Q  404 acaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    || ||| |||||||||||| |  ||| |||||||||||||| || |||||||||| | | |||||||||||||||    
T  3689916 acgatgtgttaggtgtgacggatggcaagtgttcttttttagtataaacgaaata-actttgagtgatgagatga 3689989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 305 - 473
Target Start/End: Original strand, 30906548 - 30906717
Alignment:
Q  305 catagaaatttgttttccatgttctctgttttt-aaaatattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagga 403  Q
    ||||||| ||||||||||||||||||||||||| ||| || |||| |||| ||| |||||||||||||||||| ||||| ||||  |    |||||||||    
T  30906548 catagaactttgttttccatgttctctgtttttcaaactactttgtataattaacatgaaaaaactaacaagagatggacgatcacatcgacggtgagga 30906647  T
Q  404 acaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatga 473  Q
    |  || | |||||| | ||| ||| ||| |||||||||||| ||||||||||||||||| ||||||||||    
T  30906648 atgatagattaggttttactagcgtctaatgttcttttttagtagaaacgaaatagagtgtgagtgatga 30906717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 479
Target Start/End: Original strand, 44018664 - 44018831
Alignment:
Q  313 tttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgaggaacaatggg 411  Q
    |||||||||||||||||||| |||| ||| || |||| ||||  || ||| || ||||||||| | ||||| ||||| ||  ||||| |||||| ||  |    
T  44018664 tttgttttccatgttctctggttttcaaactactttgtataatcaacatggaagaactaacaaaagatggacgatcccagccgcggtaaggaacgattag 44018763  T
Q  412 ttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatgat 479  Q
    ||| ||||| ||| |||||||||||||||||||  |||||  ||||| ||| ||||||||||||||||    
T  44018764 ttaagtgtggctgacggctagtgttcttttttagcagaaataaaatacagtgtgagtgatgagatgat 44018831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 309 - 471
Target Start/End: Original strand, 3919581 - 3919744
Alignment:
Q  309 gaaatttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgaggaacaa 407  Q
    ||||||||||||| |||||| |||||||| ||| || ||||  ||||||| |||||||||||||||||| ||||| |||||     ||| |||||||| |    
T  3919581 gaaatttgttttctatgttcactgtttttcaaactactttgtgtaactaacatgaaaaaactaacaagatatggaggatccctacggcgatgaggaacga 3919680  T
Q  408 tgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgat 471  Q
    | ||||||||||| | | |  ||| |||||||||| | ||||||||| ||| ||| ||||||||    
T  3919681 taggttaggtgtggccgacaactaatgttctttttaagtagaaacgatataaagtgtgagtgat 3919744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 335 - 478
Target Start/End: Original strand, 22847946 - 22848089
Alignment:
Q  335 tttaaaatattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatg-cggtgaggaacaatgggttaggtgtgactggcggctagt 433  Q
    |||||| || |||| |||||||| |||||||||||||||  | ||||| ||||||| ||| | ||||||||  |||||||||||||| || | | | |||    
T  22847946 tttaaactactttgtataactaacatgaaaaaactaacataagatggacgatccta-atgactgtgaggaatgatgggttaggtgtggctagtgtcaagt 22848044  T
Q  434 gttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    ||||||||| | || |||| ||||| ||| |||||||||||||||    
T  22848045 gttctttttaagtataaacaaaataaagtgtgagtgatgagatga 22848089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 373
Target Start/End: Complemental strand, 4241166 - 4241097
Alignment:
Q  305 catagaaatttgttttccatgttctctgttttt-aaaatattttgaataactaatatgaaaaaactaaca 373  Q
    ||||||| ||||||||||||||||||| ||||| ||| || |||| |||| ||| |||||||||||||||    
T  4241166 catagaactttgttttccatgttctctctttttcaaactactttgtataattaacatgaaaaaactaaca 4241097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 33221466 - 33221552
Alignment:
Q  398 tgaggaacaatgggttaggtgtgactggcggctagtgttc-ttttttattagaaacgaaatagagtatgagtgatgagatgatgatg 483  Q
    ||||||||||||||||||||||| ||  |  ||||  ||  ||||||| |||||| ||||| |||||||||||| ||||||||||||    
T  33221466 tgaggaacaatgggttaggtgtggctttcatctaggatttattttttagtagaaatgaaattgagtatgagtgaagagatgatgatg 33221552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 442
Target Start/End: Complemental strand, 27866952 - 27866904
Alignment:
Q  394 gcggtgaggaacaatgggttaggtgtgactggcggctagtgttcttttt 442  Q
    |||| ||||||| ||| |||||||||||||| |||||||| ||||||||    
T  27866952 gcggcgaggaacgatgagttaggtgtgactgacggctagtattcttttt 27866904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 305 - 478
Target Start/End: Original strand, 32678165 - 32678339
Alignment:
Q  305 catagaaatttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagga 403  Q
    ||||||| |||||||| ||||||||||||||||  || || |||| |||||||| ||||||||||||| |||| ||||| |||||  |  ||| |||| |    
T  32678165 catagaactttgtttttcatgttctctgtttttcgaactactttgtataactaacatgaaaaaactaataagagatggacgatccccgcggcgatgagaa 32678264  T
Q  404 acaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    || ||||||||||||| || |   ||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  32678265 acgatgggttaggtgtaacggatagctagtgttcttttttagtagaaacgaaatagactatgagtgatgagatga 32678339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 476
Target Start/End: Original strand, 8414258 - 8414430
Alignment:
Q  305 catagaaatttgttttccatgttctctgttttt-aaaatattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagga 403  Q
    ||||||| |||||||| ||||| |||| ||||| |||||| |||  | |||||| ||| |||||||||||||| || || ||||| |   |||||||| |    
T  8414258 catagaactttgtttttcatgtactctatttttcaaaatactttttacaactaacatggaaaaactaacaagagattgacgatcccaacagcggtgagaa 8414357  T
Q  404 acaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagat 476  Q
    || |||||||||||||| ||  || |||||||||||||||| ||||||||||||||||| |||||||||||||    
T  8414358 acgatgggttaggtgtggctaacgactagtgttcttttttagtagaaacgaaatagagtgtgagtgatgagat 8414430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 398 - 475
Target Start/End: Complemental strand, 11911967 - 11911890
Alignment:
Q  398 tgaggaacaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgaga 475  Q
    |||||||| || |||||||||||| |||||||||| ||||| ||||| || |||||||||||| ||||||||||||||    
T  11911967 tgaggaacgattggttaggtgtgattggcggctagcgttctcttttagtataaacgaaatagattatgagtgatgaga 11911890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 478
Target Start/End: Original strand, 27320229 - 27320363
Alignment:
Q  345 tttgaataactaatatgaaaaaactaac-aagaaatggatgatcctagatgcggtgaggaacaatgggttaggtgtgactggcggctagtgttctttttt 443  Q
    |||| |||||||| |||||||||||||| |||| || || ||||| ||  |||  |||||||||||||| || |||||| | || ||| |||||||| ||    
T  27320229 tttgtataactaacatgaaaaaactaactaagagatagacgatcccagcagcgacgaggaacaatgggtaagatgtgaccgacgactaatgttctttctt 27320328  T
Q  444 attagaaacgaaatagagtatgagtgatgagatga 478  Q
    | |||||| |||||| ||||||||||| |||||||    
T  27320329 aatagaaatgaaatatagtatgagtgaagagatga 27320363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 460
Target Start/End: Original strand, 50574454 - 50574516
Alignment:
Q  398 tgaggaacaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaataga 460  Q
    |||||||||||| ||||||||||  ||||  |||||||||||||||| ||||||  |||||||    
T  50574454 tgaggaacaatgagttaggtgtggttggcacctagtgttcttttttagtagaaataaaataga 50574516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 478
Target Start/End: Complemental strand, 17531081 - 17530908
Alignment:
Q  306 atagaaatttgttttccatgttctctgttttt-aaaatattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgaggaa 404  Q
    |||||| ||||||||||||||||| ||||||| ||| || | || |||| ||| ||||||||||||||| || ||| | ||||| |    |||||| |||    
T  17531081 atagaactttgttttccatgttctatgtttttcaaactactatgtataattaacatgaaaaaactaacatgagatgaacgatcccatcgacggtgaagaa 17530982  T
Q  405 caatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
      ||   |||||||  | || || || ||||||||||||| || |||||||||||||| ||||  |||||||||    
T  17530981 tgataaattaggtgaaattgacgtctggtgttcttttttagtataaacgaaatagagtgtgaggaatgagatga 17530908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 50846652 - 50846709
Alignment:
Q  40 aggagagtaaatcagatgaagggtaaccagatcactagaggtagagaaagacttggaa 97  Q
    ||||||||| |||||||| ||| ||| || ||||||||||| |||| |||||||||||    
T  50846652 aggagagtagatcagatggaggataatcatatcactagaggcagaggaagacttggaa 50846709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 6573464 - 6573408
Alignment:
Q  29 attttatagtaaggagagtaaatcagatgaagggtaaccagatcactagaggtagag 85  Q
    ||||| |||||| |||||||||||||||| |||||||  | ||||||||||| ||||    
T  6573464 attttgtagtaaagagagtaaatcagatggagggtaattaaatcactagaggcagag 6573408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 8796291 - 8796347
Alignment:
Q  35 tagtaaggagagtaaatcagatgaagggtaaccagatcactagaggtagagaaagac 91  Q
    |||||||||||||||||| |||| ||| ||  |||||||||||||| |||| |||||    
T  8796291 tagtaaggagagtaaatcggatggaggatagtcagatcactagaggcagaggaagac 8796347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 305 - 475
Target Start/End: Original strand, 7239002 - 7239174
Alignment:
Q  305 catagaaatttgttttccatgttctctgttttt--aaaatattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagg 402  Q
    ||||||| ||||||||| | |||||||||||||  ||| || |||  |||||||| |||||||||||||||||| ||||| ||||| |    |||||||     
T  7239002 catagaactttgttttctaggttctctgttttttcaaactactttctataactaacatgaaaaaactaacaagagatggacgatcccaacgacggtgagc 7239101  T
Q  403 aacaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgaga 475  Q
    ||| ||| ||||||| |||||||||||||||||||||||||  || |||||||||||||| ||||||||||||    
T  7239102 aacgatgagttaggtatgactggcggctagtgttcttttttggtataaacgaaatagagtgtgagtgatgaga 7239174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 305 - 475
Target Start/End: Original strand, 7244178 - 7244350
Alignment:
Q  305 catagaaatttgttttccatgttctctgttttt--aaaatattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagg 402  Q
    ||||||| ||||||||| | |||||||||||||  ||| || |||  |||||||| |||||||||||||||||| ||||| ||||| |    |||||||     
T  7244178 catagaactttgttttctaggttctctgttttttcaaactactttctataactaacatgaaaaaactaacaagagatggacgatcccaacgacggtgagc 7244277  T
Q  403 aacaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgaga 475  Q
    ||| ||| ||||||| |||||||||||||||||||||||||  || |||||||||||||| ||||||||||||    
T  7244278 aacgatgagttaggtatgactggcggctagtgttcttttttggtataaacgaaatagagtgtgagtgatgaga 7244350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 305 - 478
Target Start/End: Original strand, 1497902 - 1498076
Alignment:
Q  305 catagaaatttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagga 403  Q
    ||||||| |||||||||||| |||||||||||| ||| || |||  |||||||||||||||||||||| |||| ||||| ||||||    ||||||||||    
T  1497902 catagaactttgttttccatattctctgtttttcaaactactttttataactaatatgaaaaaactaaaaagagatggacgatcctgacggcggtgagga 1498001  T
Q  404 acaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    || ||| |||||| ||||  | || | |||||||||||||   | ||||||| |||||| |||||||||||||||    
T  1498002 acgatgagttaggggtgatcgacgacaagtgttctttttttgcaaaaacgaattagagtgtgagtgatgagatga 1498076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 372 - 478
Target Start/End: Complemental strand, 17770622 - 17770516
Alignment:
Q  372 caagaaatggatgatcctagatgcggtgaggaacaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgat 471  Q
    ||||| ||||||||||||||   ||||||||||| ||||||||||||||  || ||||||||||||||||||| |||||| || ||||||| |||||| |    
T  17770622 caagagatggatgatcctagtgacggtgaggaacgatgggttaggtgtggttgacggctagtgttcttttttagtagaaatgatatagagtgtgagtggt 17770523  T
Q  472 gagatga 478  Q
    |||||||    
T  17770522 gagatga 17770516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 411 - 478
Target Start/End: Complemental strand, 20665739 - 20665672
Alignment:
Q  411 gttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    ||||||||||||| | |||||||||| ||||||| ||||||| ||||||||| |||||||||||||||    
T  20665739 gttaggtgtgactagtggctagtgtttttttttagtagaaacaaaatagagtgtgagtgatgagatga 20665672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 430 - 482
Target Start/End: Complemental strand, 20665591 - 20665539
Alignment:
Q  430 tagtgttcttttttattagaaacgaaatagagtatgagtgatgagatgatgat 482  Q
    ||||||||||||||| ||||||| ||||||||| |||||||||||||||||||    
T  20665591 tagtgttcttttttagtagaaacaaaatagagtctgagtgatgagatgatgat 20665539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 313 - 478
Target Start/End: Original strand, 12471453 - 12471616
Alignment:
Q  313 tttgttttccatgttctctgtttttaaaat-attttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgaggaacaatggg 411  Q
    ||||||||||||||||| ||||||| |||| | |||| |||||||| |||||||||||||||||| ||||| ||||| |    ||||||||||| |||||    
T  12471453 tttgttttccatgttctatgttttttaaattactttgtataactaacatgaaaaaactaacaagacatggacgatcccaacgacggtgaggaacgatggg 12471552  T
Q  412 ttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    ||| ||||||||| | |||| |||||||||||| ||||||| ||||||||  |||||||||||||||    
T  12471553 ttatgtgtgactgac-gctaatgttcttttttagtagaaacaaaatagag--tgagtgatgagatga 12471616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 313 - 478
Target Start/End: Original strand, 25544923 - 25545089
Alignment:
Q  313 tttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgaggaacaatggg 411  Q
    |||||||| |||||| | ||||||| ||| || |||| |||||||| |||||||||||||| ||| ||||| ||||| |    ||||||||||| |||||    
T  25544923 tttgtttttcatgttgtttgtttttcaaactactttgtataactaacatgaaaaaactaacgagagatggacgatcccaacgacggtgaggaacgatggg 25545022  T
Q  412 ttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    |||||||||||| ||||||||||||| |||||| ||||||| |||||| ||  ||||||||||||||    
T  25545023 ttaggtgtgactagcggctagtgttcatttttagtagaaacaaaatagggttggagtgatgagatga 25545089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 317 - 478
Target Start/End: Original strand, 39571521 - 39571682
Alignment:
Q  317 ttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgaggaacaatgggttag 415  Q
    ||||||||||||| ||||||| ||  || |||| |||||||| || ||||||||||||||| ||||| ||||| |   ||| |||||||  || | ||||    
T  39571521 ttttccatgttctttgtttttcaatctactttgtataactaacat-aaaaaactaacaagagatggacgatcccaacggcgatgaggaatgattgtttag 39571619  T
Q  416 gtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    ||||||||| ||||||| ||||||||||| || |||||||||||| |||||||||||||||||    
T  39571620 gtgtgactgacggctagcgttcttttttagtataaacgaaatagattatgagtgatgagatga 39571682  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 397 - 478
Target Start/End: Original strand, 12012739 - 12012820
Alignment:
Q  397 gtgaggaacaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    ||||||||||||||||||||| ||||| ||||||||||||| |||||| ||||||||||||| ||| |||||||| ||||||    
T  12012739 gtgaggaacaatgggttaggtatgactagcggctagtgttcgtttttagtagaaacgaaatatagtgtgagtgataagatga 12012820  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 306 - 458
Target Start/End: Complemental strand, 48071085 - 48070934
Alignment:
Q  306 atagaaatttgttttccatgttctctgttttt-aaaatattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgaggaa 404  Q
    |||||| |||||||||||| || ||||||||| |||||| |||| |||| ||| ||||||| |||||| |||  |||| |||||     |||  ||||||    
T  48071085 atagaactttgttttccatattatctgtttttcaaaatactttgtataattaacatgaaaatactaacgaga--tggacgatcccgacggcgacgaggaa 48070988  T
Q  405 caatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaata 458  Q
    | ||| ||||||||||| |||||||||||||||||||||| |||||||||||||    
T  48070987 cgatgagttaggtgtgaatggcggctagtgttcttttttagtagaaacgaaata 48070934  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 313 - 463
Target Start/End: Original strand, 12470739 - 12470891
Alignment:
Q  313 tttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaa-ctaacaagaaatggatgatcctagatgcggtgaggaacaatgg 410  Q
    |||| |||||||||||||||||||| ||| || |||| |||||||| ||||||||| ||||||||| |||||  || | |     | ||||||||||||     
T  12470739 tttgctttccatgttctctgttttttaaactactttgtataactaacatgaaaaaaactaacaagacatggacaattccaacaatgatgaggaacaatga 12470838  T
Q  411 gttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagta 463  Q
    |||||||||||||| || | | |||||||||||| ||||||||||||||||||    
T  12470839 gttaggtgtgactgacgaccaatgttcttttttagtagaaacgaaatagagta 12470891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 314 - 444
Target Start/End: Original strand, 2500834 - 2500964
Alignment:
Q  314 ttgttttccatgttctctgtttttaaaatattttgaataactaatatgaaaaaactaacaagaaatggatga-tcctagatgcggtgaggaacaatgggt 412  Q
    |||||||||||||||  ||||||| ||||| |||| |||||||| |||||||||||||||||| ||||| || | | | |  ||||||||||| ||||||    
T  2500834 ttgttttccatgttcattgtttttcaaatactttgtataactaacatgaaaaaactaacaagagatggacgattacgaca-acggtgaggaacgatgggt 2500932  T
Q  413 taggtgtgactggcggctagtgttctttttta 444  Q
    ||||||||||| || | ||||||| |||||||    
T  2500933 taggtgtgacttgcagatagtgttatttttta 2500964  T

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Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 476
Target Start/End: Complemental strand, 31136615 - 31136445
Alignment:
Q  305 catagaaatttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcct-agatgcggtgagg 402  Q
    ||||||| |||||||| | |||||||| ||||| ||| || |||| ||||||   |||||||||||||||||| ||||| ||||||  |||  |||||||    
T  31136615 catagaactttgtttttcttgttctctatttttcaaactactttgtataacttgcatgaaaaaactaacaagatatggacgatcctgtgat--ggtgagg 31136518  T
Q  403 aacaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagat 476  Q
    |||||| |||||||||||| || | | |||| || ||||||| |||||| | |||||||| |||||||||||||    
T  31136517 aacaataggttaggtgtgattgacaggtagtatt-ttttttagtagaaatggaatagagtgtgagtgatgagat 31136445  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 476
Target Start/End: Complemental strand, 30396549 - 30396508
Alignment:
Q  435 ttcttttttattagaaacgaaatagagtatgagtgatgagat 476  Q
    |||||||||| |||||| |||||||||| |||||||||||||    
T  30396549 ttcttttttagtagaaatgaaatagagtctgagtgatgagat 30396508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 478
Target Start/End: Original strand, 2197513 - 2197553
Alignment:
Q  438 ttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    ||||||| |||||| |||||||||| |||||||||||||||    
T  2197513 ttttttagtagaaatgaaatagagtctgagtgatgagatga 2197553  T

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Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 305 - 481
Target Start/End: Original strand, 53392853 - 53393031
Alignment:
Q  305 catagaaatttgttttccatgttctctgttttt-aaaatattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagga 403  Q
    ||||||| ||| ||||||||||||||||||||| |||||| |||| || ||||| ||||||||| |||||||| ||||| ||||| ||  |||  |||||    
T  53392853 catagaactttattttccatgttctctgtttttcaaaatactttgtattactaacatgaaaaaattaacaagagatggacgatccaagcggcgccgagga 53392952  T
Q  404 acaatgggttaggtgtgactggcggctagtgttc-ttttttattagaaacgaaatagagtatgagtgatgagatgatga 481  Q
    || || |||||||||||||| ||||  |  |||| ||||||| ||||||| ||||||||| ||||||||||||||||||    
T  53392953 acgataggttaggtgtgactagcggtcaacgttctttttttaatagaaacaaaatagagtgtgagtgatgagatgatga 53393031  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 313 - 478
Target Start/End: Original strand, 19681785 - 19681951
Alignment:
Q  313 tttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgaggaacaatggg 411  Q
    |||| |||||||||||||| ||||| ||| || |||| |||||||| ||||||||||||| |||| |||||  |||  ||  | |  ||||||| |||||    
T  19681785 tttggtttccatgttctctatttttcaaactactttgtataactaacatgaaaaaactaaaaagagatggacaatctcagcggtgacgaggaacgatggg 19681884  T
Q  412 ttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||| || | |||||| ||||||    
T  19681885 ttaggtgagactgacggctagtgttcttttttagtagaaacgaaatagtgtgtaagtgattagatga 19681951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 305 - 478
Target Start/End: Complemental strand, 42141713 - 42141543
Alignment:
Q  305 catagaaatttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagga 403  Q
    ||||||| |||||||| |||||| ||||||||| ||| || |||| |||||||| ||||||||||||||  || ||||| ||||| |    || ||||||    
T  42141713 catagaactttgttttacatgttatctgtttttcaaactactttgtataactaacatgaaaaaactaac--gacatggacgatcccaacgacgatgagga 42141616  T
Q  404 acaatgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    || ||||||||||||||||  | ||||||| |||||||||| |||||| |||||||||  ||||| |||||||||    
T  42141615 acgatgggttaggtgtgaccagtggctagtattcttttttagtagaaaagaaatagag--tgagtaatgagatga 42141543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 407 - 478
Target Start/End: Original strand, 13207200 - 13207271
Alignment:
Q  407 atgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatga 478  Q
    ||||| ||||||||  ||| |||| ||||| ||||||| |||||| |||||||||| |||||||||||||||    
T  13207200 atgggctaggtgtggttggtggcttgtgttgttttttaatagaaatgaaatagagtctgagtgatgagatga 13207271  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 28351641 - 28351697
Alignment:
Q  35 tagtaaggagagtaaatcagatgaagggtaaccagatcactagaggtagagaaagac 91  Q
    |||||||||||||| |||||||| ||| ||  ||||| || ||||||||||||||||    
T  28351641 tagtaaggagagtagatcagatggaggatagtcagattacaagaggtagagaaagac 28351697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 47147455 - 47147511
Alignment:
Q  35 tagtaaggagagtaaatcagatgaagggtaaccagatcactagaggtagagaaagac 91  Q
    ||||||||||||||||||||||| || |||  | |||||||||||| |||| |||||    
T  47147455 tagtaaggagagtaaatcagatggagagtagtcggatcactagaggcagaggaagac 47147511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 345 - 478
Target Start/End: Original strand, 2296 - 2429
Alignment:
Q  345 tttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgaggaacaatgggttaggtgtgactggcggctagtgttctttttta 444  Q
    |||| |||||||| |||||||||||||||| | ||||||||||| |   | |||||| ||| |||||||||||||||||||||| ||||||||||||||     
T  2296 tttgtataactaaaatgaaaaaactaacaaaagatggatgatcccatcggtggtgagaaacgatgggttaggtgtgactggcggttagtgttcttttttc 2395  T
Q  445 ttagaaacgaaatagagtatgagtgatgagatga 478  Q
     |||||||  |||||||| ||||||| |||||||    
T  2396 gtagaaacagaatagagtgtgagtgacgagatga 2429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 305 - 483
Target Start/End: Complemental strand, 8639 - 8460
Alignment:
Q  305 catagaaatttgttttccatgttctctgtttttaaaa-tattttgaataactaatatgaaaaaactaacaagaaatggatgatcctagatgcggtgagga 403  Q
    ||||||| |||||||||||||||||||| || | ||| || ||||  |||||||  ||||||||||||||||| ||| | ||||| |     | ||||||    
T  8639 catagaactttgttttccatgttctctgcttctcaaactactttgtgtaactaacgtgaaaaaactaacaagagatgaacgatccaaacaatgatgagga 8540  T
Q  404 acaatgggttaggtgtgactggcggctagtgttctttt-ttattagaaacgaaatagagtatgagtgatgagatgatgatg 483  Q
    || |||||||||  |||||||||||||||||||||||| ||| ||||||  ||||||||  ||||||||||||||||||||    
T  8539 acgatgggttagc-gtgactggcggctagtgttcttttcttagtagaaagtaaatagagcgtgagtgatgagatgatgatg 8460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 407 - 477
Target Start/End: Complemental strand, 6677 - 6607
Alignment:
Q  407 atgggttaggtgtgactggcggctagtgttcttttttattagaaacgaaatagagtatgagtgatgagatg 477  Q
    ||||||||||| |||||||  |||||||||| | |||| ||||||||||||||||| ||| ||||||||||    
T  6677 atgggttaggtatgactggaagctagtgttcctatttagtagaaacgaaatagagtgtgaatgatgagatg 6607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 6894 - 6835
Alignment:
Q  202 aaaaagaacccaaaccaaactagtcggtatagatcagttcggtagatcgatttgtttgaa 261  Q
    |||||||| || |||||||||||||||| | |||| ||||||| ||||||||||||||||    
T  6894 aaaaagaaaccgaaccaaactagtcggtttggatcggttcggttgatcgatttgtttgaa 6835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 382
Target Start/End: Complemental strand, 6767 - 6690
Alignment:
Q  305 catagaaatttgttttccatgttctctgtttttaaaatattttgaataactaatatgaaaaaactaacaagaaatgga 382  Q
    ||||||| ||||||||||||||||| ||||| | |||    ||| |||||||| |||||||||| ||||||| |||||    
T  6767 catagaactttgttttccatgttctatgtttatcaaactacttgtataactaacatgaaaaaacgaacaagagatgga 6690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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