View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_low_15 (Length: 457)
Name: NF3550_low_15
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 12 - 444
Target Start/End: Original strand, 1584471 - 1584902
Alignment:
| Q |
12 |
atgaagggtctattgaaggatcagctgcaccatttgtagtgaagtttctcaatctgttgctgaagaattgacatgctgttgtaccaattgtatgtccacc |
111 |
Q |
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| T |
1584471 |
atgaagggtctattgaaggatcagctgcaccatttgtagtgaagtttctcaatctgttgctgaagaattgacatgctgttgtaccaattgtatgtccacc |
1584570 |
T |
|
| Q |
112 |
tataatatattcatagaatattaattaatgtgaatgcaacttcaatatgtaattctaaagtggtaaataaattttgaaaatatttagatctcttaccaac |
211 |
Q |
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| T |
1584571 |
tataatatattcataaaatattaattaatgtga-tgcaacatcaatatgtaattctagagtgataaataaatttcgaaaatatttagatctcttaccaac |
1584669 |
T |
|
| Q |
212 |
aagggtgacaaggtcttgagtgttaaggccttttgctgcaaacttttgtttctgctcatcaacagaatcaccaggagcaggcaagttattgacatcagaa |
311 |
Q |
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| T |
1584670 |
aagggtgacaaggtcttgagtgttaaggccttttgttgcaaacttttgtttctgctcatcaacagaatcaccaggagcaggcaagttattgacatcagaa |
1584769 |
T |
|
| Q |
312 |
gcctgtgacacgcgtccgtctctgcgcccggtaggaacttgccaactaagaccaccactctacaatgcatacataaatcaattataggtccatatttcaa |
411 |
Q |
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| T |
1584770 |
gcctgtgacacgcgtccgtctctgcgcccggtaggaacttgccaactaagaccaccactctacaatgcatacataaatcaattataggtccatatttcaa |
1584869 |
T |
|
| Q |
412 |
caagttaagaacttattacactaagtaatatat |
444 |
Q |
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| T |
1584870 |
caagttaagaacttattacactaagtaatatat |
1584902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 1593412 - 1593216
Alignment:
| Q |
12 |
atgaagggtctattgaaggatcagctgcaccatttgtagtgaagtttctcaatctgttgctgaagaattgacatgctgttgtaccaattgtatgtccacc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1593412 |
atgaagggtctattgaaggatcagctgcaccatttgtagtaaagtttctcaatctgttgctgaagaattgacatgctgttgtaccaattgtatgtccacc |
1593313 |
T |
|
| Q |
112 |
tataatatattcatagaatattaattaatgtgaatgcaacttcaatatgtaattctaaagtggtaaataaattttgaaaatatttagatctcttacca |
209 |
Q |
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| T |
1593312 |
tataatatattcataaaatattaattaatgtg-atgcaacatcaatatgtaattctagagtgataaataaattttgaaaatatttagatctcttacca |
1593216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 203 - 429
Target Start/End: Complemental strand, 1592411 - 1592187
Alignment:
| Q |
203 |
cttaccaacaagggtgacaaggtcttgagtgttaaggccttttgctgcaaacttttgtttctgctcatcaacagaatcaccaggagcaggcaagttattg |
302 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||| |
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| T |
1592411 |
cttaccaacaagggtgacaaggtcttgagtgttgaggccttttgctgcaaacttttgtttctgcacatcaacagaatcactaggagcgggcaagttattg |
1592312 |
T |
|
| Q |
303 |
acatcagaagcctgtgacacgcgtccgtctctgcgcccggtaggaacttgccaactaagaccaccactctacaatgcatacataaatcaattataggtcc |
402 |
Q |
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|| ||||||||||||||||||||||||||||| || || ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1592311 |
acgtcagaagcctgtgacacgcgtccgtctctacgtccagtaagaacttgccaactaagaccaccactctacaatgcatacataaatcaat--taggtcc |
1592214 |
T |
|
| Q |
403 |
atatttcaacaagttaagaacttatta |
429 |
Q |
| |
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|||||||||||| ||| ||||| |||| |
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|
| T |
1592213 |
atatttcaacaaattatgaactgatta |
1592187 |
T |
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